MPSQ: A web tool for protein-state searching

Siyuan Zheng; Jia Sheng; Chuan Wang; Xiaojing Wang; Yao Yu; Yun Li; Alex Michie; Jianliang Dai; Yang Zhong; Pei Hao; Lei Liu; Yixue Li

doi:10.1093/bioinformatics/btn427

MPSQ: A web tool for protein-state searching

Siyuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li

Producción científica: Article › revisión exhaustiva

4 Citas (Scopus)

Resumen

Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.

Idioma original	English (US)
Páginas (desde-hasta)	2412-2413
Número de páginas	2
Publicación	Bioinformatics
Volumen	24
N.º	20
DOI	https://doi.org/10.1093/bioinformatics/btn427
Estado	Published - oct 2008
Publicado de forma externa	Sí

ASJC Scopus subject areas

Computational Mathematics
Molecular Biology
Biochemistry
Statistics and Probability
Computer Science Applications
Computational Theory and Mathematics

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@article{e75495e02ab842f8b132f5272dc9e821,

title = "MPSQ: A web tool for protein-state searching",

abstract = "Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.",

author = "Siyuan Zheng and Jia Sheng and Chuan Wang and Xiaojing Wang and Yao Yu and Yun Li and Alex Michie and Jianliang Dai and Yang Zhong and Pei Hao and Lei Liu and Yixue Li",

note = "Funding Information: Funding: National High-Tech R&D Program of China (863) (grant 2006AA02Z334, 2007AA02Z304, 2006AA020406, 2007DFA31040); Shanghai Committee of Science and Technology (grant 07dz22004, 07ZR14085); the National Basic Research Program of China (grant 2006CB910700, 2003CB715901); the Key Research Program of Chinese Academy of Sciences (grant KSCX2-YW-R-112).",

year = "2008",

month = oct,

doi = "10.1093/bioinformatics/btn427",

language = "English (US)",

volume = "24",

pages = "2412--2413",

journal = "Bioinformatics",

issn = "1367-4803",

publisher = "Oxford University Press",

number = "20",

}

TY - JOUR

T1 - MPSQ

T2 - A web tool for protein-state searching

AU - Zheng, Siyuan

AU - Sheng, Jia

AU - Wang, Chuan

AU - Wang, Xiaojing

AU - Yu, Yao

AU - Li, Yun

AU - Michie, Alex

AU - Dai, Jianliang

AU - Zhong, Yang

AU - Hao, Pei

AU - Liu, Lei

AU - Li, Yixue

N1 - Funding Information: Funding: National High-Tech R&D Program of China (863) (grant 2006AA02Z334, 2007AA02Z304, 2006AA020406, 2007DFA31040); Shanghai Committee of Science and Technology (grant 07dz22004, 07ZR14085); the National Basic Research Program of China (grant 2006CB910700, 2003CB715901); the Key Research Program of Chinese Academy of Sciences (grant KSCX2-YW-R-112).

PY - 2008/10

Y1 - 2008/10

N2 - Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.

AB - Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.

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U2 - 10.1093/bioinformatics/btn427

DO - 10.1093/bioinformatics/btn427

M3 - Article

C2 - 18697766

AN - SCOPUS:53749103236

SN - 1367-4803

VL - 24

SP - 2412

EP - 2413

JO - Bioinformatics

JF - Bioinformatics

IS - 20

ER -

MPSQ: A web tool for protein-state searching

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ASJC Scopus subject areas

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