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Biologically relevant simulations for validating risk models under small-sample conditions

  • Alex F. Bokov
  • , Laura S. Manuel
  • , Alfredo Tirado-Ramos
  • , Jon A. Gelfond
  • , Scott D. Pletcher

    Producción científica: Conference contribution

    Resumen

    In designing scientific experiments, power analysis is too often given a superficial treatment - choice of sample size is often made based on idealized distributions and simplistic tests that do not reflect the real-world constraints under which the actual data will be collected. We have developed a general Monte Carlo framework for two-group comparisons which samples points from a two-dimensional parameter space and at each point generates simulated datasets which are compared to simulated datasets for a 'control group' at a fixed point in the parameter space. Rather than uniformly sampling this parameter space, our algorithm rapidly converges on a contour corresponding to the smallest detectable difference for the sample size of interest. We apply this framework, implemented as an R library called PowerTrip, to directly comparing the performance and sensitivity to sample size of the Gompertz survival model to several other commonly used survival models. We find that the Gompertz mortality model performs approximately as well as the Weibull and the Cox models throughout most of the parameter space, but outperforms the competing models in cases where initial mortality rate (IMR) and rate of acceleration (RoA) change in opposite directions.

    Idioma originalEnglish (US)
    Título de la publicación alojada2017 IEEE Symposium on Computers and Communications, ISCC 2017
    EditorialInstitute of Electrical and Electronics Engineers Inc.
    Páginas290-295
    Número de páginas6
    ISBN (versión digital)9781538616291
    DOI
    EstadoPublished - sept 1 2017
    Evento2017 IEEE Symposium on Computers and Communications, ISCC 2017 - Heraklion, Greece
    Duración: jul 3 2017jul 7 2017

    Serie de la publicación

    NombreProceedings - IEEE Symposium on Computers and Communications
    ISSN (versión impresa)1530-1346

    Other

    Other2017 IEEE Symposium on Computers and Communications, ISCC 2017
    País/TerritorioGreece
    CiudadHeraklion
    Período7/3/177/7/17

    ASJC Scopus subject areas

    • Software
    • Signal Processing
    • General Mathematics
    • Computer Science Applications
    • Computer Networks and Communications

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