TY - JOUR
T1 - A genome-wide association meta-analysis of circulating sex hormone-binding globulin reveals multiple loci implicated in sex steroid hormone regulation
AU - Coviello, Andrea D.
AU - Haring, Robin
AU - Wellons, Melissa
AU - Vaidya, Dhananjay
AU - Lehtimäki, Terho
AU - Keildson, Sarah
AU - Lunetta, Kathryn L.
AU - He, Chunyan
AU - Fornage, Myriam
AU - Lagou, Vasiliki
AU - Mangino, Massimo
AU - Onland-Moret, N. Charlotte
AU - Chen, Brian
AU - Eriksson, Joel
AU - Garcia, Melissa
AU - Liu, Yong Mei
AU - Koster, Annemarie
AU - Lohman, Kurt
AU - Lyytikäinen, Leo Pekka
AU - Petersen, Ann Kristin
AU - Prescott, Jennifer
AU - Stolk, Lisette
AU - Vandenput, Liesbeth
AU - Wood, Andrew R.
AU - Zhuang, Wei Vivian
AU - Ruokonen, Aimo
AU - Hartikainen, Anna Liisa
AU - Pouta, Anneli
AU - Bandinelli, Stefania
AU - Biffar, Reiner
AU - Brabant, Georg
AU - Cox, David G.
AU - Chen, Yuhui
AU - Cummings, Steven
AU - Ferrucci, Luigi
AU - Gunter, Marc J.
AU - Hankinson, Susan E.
AU - Martikainen, Hannu
AU - Hofman, Albert
AU - Homuth, Georg
AU - Illig, Thomas
AU - Jansson, John Olov
AU - Johnson, Andrew D.
AU - Karasik, David
AU - Karlsson, Magnus
AU - Kettunen, Johannes
AU - Kiel, Douglas P.
AU - Kraft, Peter
AU - Liu, Jingmin
AU - Ljunggren, Östen
AU - Lorentzon, Mattias
AU - Maggio, Marcello
AU - Markus, Marcello R.P.
AU - Mellström, Dan
AU - Miljkovic, Iva
AU - Mirel, Daniel
AU - Nelson, Sarah
AU - Morin Papunen, Laure
AU - Peeters, Petra H.M.
AU - Prokopenko, Inga
AU - Raffel, Leslie
AU - Reincke, Martin
AU - Reiner, Alex P.
AU - Rexrode, Kathryn
AU - Rivadeneira, Fernando
AU - Schwartz, Stephen M.
AU - Siscovick, David
AU - Soranzo, Nicole
AU - Stöckl, Doris
AU - Tworoger, Shelley
AU - Uitterlinden, André G.
AU - van Gils, Carla H.
AU - Vasan, Ramachandran S.
AU - Wichmann, H. Erich
AU - Zhai, Guangju
AU - Bhasin, Shalender
AU - Bidlingmaier, Martin
AU - Chanock, Stephen J.
AU - de Vivo, Immaculata
AU - Harris, Tamara B.
AU - Hunter, David J.
AU - Kähönen, Mika
AU - Liu, Simin
AU - Ouyang, Pamela
AU - Spector, Tim D.
AU - van der Schouw, Yvonne T.
AU - Viikari, Jorma
AU - Wallaschofski, Henri
AU - McCarthy, Mark I.
AU - Frayling, Timothy M.
AU - Murray, Anna
AU - Franks, Steve
AU - Järvelin, Marjo Riitta
AU - de Jong, Frank H.
AU - Raitakari, Olli
AU - Teumer, Alexander
AU - Ohlsson, Claes
AU - Murabito, Joanne M.
AU - Perry, John R.B.
PY - 2012/7
Y1 - 2012/7
N2 - Sex hormone-binding globulin (SHBG) is a glycoprotein responsible for the transport and biologic availability of sex steroid hormones, primarily testosterone and estradiol. SHBG has been associated with chronic diseases including type 2 diabetes (T2D) and with hormone-sensitive cancers such as breast and prostate cancer. We performed a genome-wide association study (GWAS) meta-analysis of 21,791 individuals from 10 epidemiologic studies and validated these findings in 7,046 individuals in an additional six studies. We identified twelve genomic regions (SNPs) associated with circulating SHBG concentrations. Loci near the identified SNPs included SHBG (rs12150660, 17p13.1, p = 1.8×10-106), PRMT6 (rs17496332, 1p13.3, p = 1.4×10-11), GCKR (rs780093, 2p23.3, p = 2.2×10-16), ZBTB10 (rs440837, 8q21.13, p = 3.4×10-09), JMJD1C (rs7910927, 10q21.3, p = 6.1×10-35), SLCO1B1 (rs4149056, 12p12.1, p = 1.9×10-08), NR2F2 (rs8023580, 15q26.2, p = 8.3×10-12), ZNF652 (rs2411984, 17q21.32, p = 3.5×10-14), TDGF3 (rs1573036, Xq22.3, p = 4.1×10-14), LHCGR (rs10454142, 2p16.3, p = 1.3×10-07), BAIAP2L1 (rs3779195, 7q21.3, p = 2.7×10-08), and UGT2B15 (rs293428, 4q13.2, p = 5.5×10-06). These genes encompass multiple biologic pathways, including hepatic function, lipid metabolism, carbohydrate metabolism and T2D, androgen and estrogen receptor function, epigenetic effects, and the biology of sex steroid hormone-responsive cancers including breast and prostate cancer. We found evidence of sex-differentiated genetic influences on SHBG. In a sex-specific GWAS, the loci 4q13.2-UGT2B15 was significant in men only (men p = 2.5×10-08, women p = 0.66, heterogeneity p = 0.003). Additionally, three loci showed strong sex-differentiated effects: 17p13.1-SHBG and Xq22.3-TDGF3 were stronger in men, whereas 8q21.12-ZBTB10 was stronger in women. Conditional analyses identified additional signals at the SHBG gene that together almost double the proportion of variance explained at the locus. Using an independent study of 1,129 individuals, all SNPs identified in the overall or sex-differentiated or conditional analyses explained ~15.6% and ~8.4% of the genetic variation of SHBG concentrations in men and women, respectively. The evidence for sex-differentiated effects and allelic heterogeneity highlight the importance of considering these features when estimating complex trait variance.
AB - Sex hormone-binding globulin (SHBG) is a glycoprotein responsible for the transport and biologic availability of sex steroid hormones, primarily testosterone and estradiol. SHBG has been associated with chronic diseases including type 2 diabetes (T2D) and with hormone-sensitive cancers such as breast and prostate cancer. We performed a genome-wide association study (GWAS) meta-analysis of 21,791 individuals from 10 epidemiologic studies and validated these findings in 7,046 individuals in an additional six studies. We identified twelve genomic regions (SNPs) associated with circulating SHBG concentrations. Loci near the identified SNPs included SHBG (rs12150660, 17p13.1, p = 1.8×10-106), PRMT6 (rs17496332, 1p13.3, p = 1.4×10-11), GCKR (rs780093, 2p23.3, p = 2.2×10-16), ZBTB10 (rs440837, 8q21.13, p = 3.4×10-09), JMJD1C (rs7910927, 10q21.3, p = 6.1×10-35), SLCO1B1 (rs4149056, 12p12.1, p = 1.9×10-08), NR2F2 (rs8023580, 15q26.2, p = 8.3×10-12), ZNF652 (rs2411984, 17q21.32, p = 3.5×10-14), TDGF3 (rs1573036, Xq22.3, p = 4.1×10-14), LHCGR (rs10454142, 2p16.3, p = 1.3×10-07), BAIAP2L1 (rs3779195, 7q21.3, p = 2.7×10-08), and UGT2B15 (rs293428, 4q13.2, p = 5.5×10-06). These genes encompass multiple biologic pathways, including hepatic function, lipid metabolism, carbohydrate metabolism and T2D, androgen and estrogen receptor function, epigenetic effects, and the biology of sex steroid hormone-responsive cancers including breast and prostate cancer. We found evidence of sex-differentiated genetic influences on SHBG. In a sex-specific GWAS, the loci 4q13.2-UGT2B15 was significant in men only (men p = 2.5×10-08, women p = 0.66, heterogeneity p = 0.003). Additionally, three loci showed strong sex-differentiated effects: 17p13.1-SHBG and Xq22.3-TDGF3 were stronger in men, whereas 8q21.12-ZBTB10 was stronger in women. Conditional analyses identified additional signals at the SHBG gene that together almost double the proportion of variance explained at the locus. Using an independent study of 1,129 individuals, all SNPs identified in the overall or sex-differentiated or conditional analyses explained ~15.6% and ~8.4% of the genetic variation of SHBG concentrations in men and women, respectively. The evidence for sex-differentiated effects and allelic heterogeneity highlight the importance of considering these features when estimating complex trait variance.
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U2 - 10.1371/journal.pgen.1002805
DO - 10.1371/journal.pgen.1002805
M3 - Article
C2 - 22829776
AN - SCOPUS:84864619335
SN - 1553-7390
VL - 8
JO - PLoS Genetics
JF - PLoS Genetics
IS - 7
M1 - e1002805
ER -