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Yidong Chen

Se calcula con base en el n.º de publicaciones almacenadas en Pure y citas de Scopus
1991 …2024

Resultados de investigaciones por año

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Conference contribution

Resultados de la búsqueda

  • 2015

    Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme

    Chiu, Y. C., Liang, K. W., Hsiao, T. H., Chen, Y. & Chuang, E. Y., dic 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 171-176 6 p. 7359676. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Model-based and context-specific background correction and differential methylation testing for MBDCap-seq

    Liu, Y., Wilson, D., Leach, R. J. & Chen, Y., dic 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 214-219 6 p. 7359683. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Patho-finder-A fast and accurate program for pathogen identification through RNA-seq

    Wu, C. T., Hsiao, T. H., Chiu, Y. C., Hsu, Y. C., Chuang, E. Y. & Chen, Y., dic 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1148-1151 4 p. 7359843. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

    Producción científica: Conference contribution

  • 2014

    Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test

    Zhang, L., Meng, J., Liu, H., Cui, X., Zhang, S. W., Chen, Y. & Huang, Y., feb 5 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1368-1371 4 p. 7032349. (2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014).

    Producción científica: Conference contribution

    2 Citas (Scopus)
  • 2013

    BIMMER: A Bi-layer hidden Markov model for differential methylation analysis

    Mao, Z., Huang, T. H. M., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 99-102 4 p. 6732470. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Producción científica: Conference contribution

  • Differential analysis of rna methylation sequencing data

    Cui, X., Meng, J., Rao, M. K., Chen, Y. & Huang, Y., 2013, 2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings. p. 41-42 2 p. 6736806. (2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer

    Zhang, L., Liu, H., Meng, J., Wang, X., Chen, Y. & Huangi, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 535-538 4 p. 6732553. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Producción científica: Conference contribution

  • Modeling competing endogenous RNA regulatory networks in glioblastoma multiforme

    Chiu, Y. C., Chuang, E. Y., Hsiao, T. H. & Chen, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 201-204 4 p. 6732489. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Producción científica: Conference contribution

    5 Citas (Scopus)

  • NetceRNA: An algorithm for construction of phenotype-specific regulation networks via competing endogenous RNAs

    Flores, M., Huang, Y. & Chen, Y., 2013, 2013 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2013 - Proceedings. p. 24-27 4 p. 6735921. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

  • Unveiling the dynamics in RNA epigenetic regulations

    Meng, J., Cui, X., Liu, H., Zhang, L., Zhang, S., Rao, M. K., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 139-144 6 p. 6732477. (Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013).

    Producción científica: Conference contribution

    10 Citas (Scopus)
  • 2012

    An investigation of clinical outcome prediction from integrative genomic profiles in ovarian cancer

    Zhang, L., Liu, H., Hsiao, T. H., Chen, Y. & Huang, Y., 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 103-106 4 p. 6507739. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    6 Citas (Scopus)

  • Identification of functional genomic regions with copy number alteration in liver cancer

    Hsiao, T. H., Chen, H. I. H. & Chen, Y., 2012, Proceedings 2012 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2012. p. 155-158 4 p. 6507752. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Using gene sets to identify putative drugs for breast cancer

    Hsiao, T. H., Chen, H. I. H., Chen, Y., Chen, Y. H. & Chuang, E. Y., 2012, Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2012. p. 552-555 4 p. 6392616. (Proceedings - 2012 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2012).

    Producción científica: Conference contribution

    2 Citas (Scopus)
  • 2011

    Bayesian non-negative factor analysis for reconstructing transcriptional regulatory network

    Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE Statistical Signal Processing Workshop, SSP 2011. p. 361-364 4 p. 5967704. (IEEE Workshop on Statistical Signal Processing Proceedings).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Comprehensive investigation of connectivity map data-towards a drug mode of action network for personalized thnerapy

    Ma, C., Huang, Y., Harry, H. I. & Chen, Y., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 1045-1047 3 p. 6112555. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Producción científica: Conference contribution

  • Computational prediction of microRNA regulatory pathways

    Yue, D., Chen, Y., Gao, S. J. & Huang, Y., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 158-161 4 p. 6169469. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Gene sets enrichment analysis of miRNA expression profile

    Hsiao, T. H., Chen, H. I. H., Sanchez-Diaz, P. C., Hung, J. Y., Chen, Y. & Huang, Y., 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 449-454 6 p. 6112413. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

    Producción científica: Conference contribution

  • Identifying genes associated with chemotherapy response in ovarian carcinomas based on DNA copy number and expression profiles

    Hsu, F. H., Serpedin, E., Hsiao, T. H., Bishop, A. J. R., Dougherty, E. R. & Chen, Y., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 46-49 4 p. 6169438. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Multisource biological pathway consolidation

    Doderer, M. S., Anguiano, Z., Suresh, U., Dashnamoorthy, R., Bishop, A. J. R. & Chen, Y., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 74-77 4 p. 6169447. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • S-score: A novel scoring method of gene signatures for molecular classification

    Chen, H. I., Hsiao, T. H., Chen, Y. & Keller, C., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 154-157 4 p. 6169468. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Stochastic modeling of dynamic effects of copy number alterations upon gene expression levels

    Hsu, F. H., Serpedin, E., Chen, Y. & Dougherty, E. R., 2011, Proceedings 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS'11. IEEE Computer Society, p. 83-86 4 p. 6169449. (Proceedings - IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Uncover cooperative gene regulations by microRNAs and transcription factors in glioblastoma using a nonnegative hybrid factor model

    Meng, J., Chen, H. I., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE International Conference on Acoustics, Speech, and Signal Processing, ICASSP 2011 - Proceedings. p. 6012-6015 4 p. 5947732. (ICASSP, IEEE International Conference on Acoustics, Speech and Signal Processing - Proceedings).

    Producción científica: Conference contribution

    6 Citas (Scopus)

  • Uncover transcription factor mediated gene regulations using Bayesian nonnegative factor models

    Meng, J., Chen, H. I., Zhang, J., Chen, Y. & Huang, Y., 2011, 2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011. 6061806. (2011 IEEE International Conference on Signal Processing, Communications and Computing, ICSPCC 2011).

    Producción científica: Conference contribution

  • 2010

    A bayesian decision fusion approach for microRNA target prediction

    Yue, D., Liu, H., Lu, M. Z., Chen, P., Chen, Y. & Huang, Y., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 214-221 8 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Producción científica: Conference contribution

    Acceso abierto
    5 Citas (Scopus)

  • A computational framework for predicting drug Mode-of-Action

    Ma, C., Huang, Y., Chen, H. I. & Chen, Y., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 374-379 6 p. 5703831. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

    Producción científica: Conference contribution

  • An iterated conditional mode solution for Bayesian factor modeling of transcriptional regulatory networks

    Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010. 5719679. (2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • An iterated conditional modes solution for sparse Bayesian factor modeling of transcriptional regulatory networks

    Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 335-340 6 p. 5706587. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

    Producción científica: Conference contribution

  • Computational prediction of microRNA regulatory pathways

    Yue, D., Chen, Y., Gao, S. J. & Huang, Y., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 386-391 6 p. 5703833. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

    Producción científica: Conference contribution

  • Constructing a compound Mode-of-Action network for personalized drug effectiveness prediction

    Ma, C., Chen, H. I. H., Huang, Y. & Chen, Y., 2010, 2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010. p. 520-528 9 p. (2010 ACM International Conference on Bioinformatics and Computational Biology, ACM-BCB 2010).

    Producción científica: Conference contribution

    2 Citas (Scopus)

  • SysMicrO: A novel systems approach for miRNA target prediction

    Liu, H., Zhang, L., Sun, Q., Chen, Y. & Huang, Y., 2010, Advanced Intelligent Computing Theories and Applications: With Aspects of Artificial Intelligence - 6th International Conference on Intelligent Computing, ICIC 2010, Proceedings. Huang, D.-S. & Zhang, X. (eds.). p. 9-16 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6216 LNAI).

    Producción científica: Conference contribution

  • Temporal clustering of gene expression patterns using short-time segments

    Nguyen, N., Jin, Y., Huang, Y., Chiao, Y. A., Gao, S. J., Lindsey, M. & Chen, Y., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 173-178 6 p. 5703794. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

    Producción científica: Conference contribution

    1 Cita (Scopus)

  • Uncovering transcriptional regulatory networks by sparse Bayesian factor model

    Meng, J., Zhang, J., Chen, Y. & Huang, Y., 2010, ICSP2010 - 2010 IEEE 10th International Conference on Signal Processing, Proceedings. p. 1785-1788 4 p. 5656704. (International Conference on Signal Processing Proceedings, ICSP).

    Producción científica: Conference contribution

  • 2009

    A comprehensive study of a svm-based mirna target prediction algorithm

    Liu, H., Yue, D., Chen, Y. & Huang, Y., 2009, 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2009. 5174346. (2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2009).

    Producción científica: Conference contribution

  • Mapping miRNA regulation to functional gene sets

    Chen, Y., Chen, H. I. H. & Huang, Y., 2009, Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009. p. 122-125 4 p. 5260723. (Proceedings - 2009 International Joint Conference on Bioinformatics, Systems Biology and Intelligent Computing, IJCBS 2009).

    Producción científica: Conference contribution

    1 Cita (Scopus)
  • 2008

    Application of gene set enrichment method to ChIP-chip data analysis

    Chen, Y., Yang, F. & Meltzer, P. S., 2008, GENSIPS'08 - 6th IEEE International Workshop on Genomic Signal Processing and Statistics. 4555684. (GENSIPS'08 - 6th IEEE International Workshop on Genomic Signal Processing and Statistics).

    Producción científica: Conference contribution

  • 2006

    Development of a normalization algorithm for array comparative genomic hybridization

    Singh, S., Chen, H. I. H., Hsu, F. H., Tsai, M. H., Chuang, E. Y. & Chen, Y., 2006, 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006. p. 49-50 2 p. 4161771. (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006).

    Producción científica: Conference contribution

  • Effect of normalization on microarray-based classification

    Hua, J., Balagurunathan, Y., Chen, Y., Lowey, J., Bittner, M. L., Xiong, Z., Suh, E. & Dougherty, E. R., 2006, 2006 IEEE International Workshop on Genomic Signal Processing and Statstics, GENSIPS 2006. p. 7-8 2 p. 4161750. (2006 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2006).

    Producción científica: Conference contribution

  • Quality-based distance measures and applications to clustering

    Taverna, D. M., Brun, M., Dougherty, E. R. & Chen, Y., 2006, 2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006. 4015791. (2006 IEEE/NLM Life Science Systems and Applications Workshop, LiSA 2006).

    Producción científica: Conference contribution

  • 2004

    Are we there yet? Genomic profiling and mechanism in cancer research

    Meltzer, P., Davis, S., Baird, K. & Chen, Y., 2004, Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004. p. 6 1 p. (Proceedings - 2004 IEEE Computational Systems Bioinformatics Conference, CSB 2004).

    Producción científica: Conference contribution

    1 Cita (Scopus)
  • 1999

    Clustering analysis for gene expression data

    Chen, Y., Ermolaeva, O., Bittner, M., Meltzer, P., Trent, J., Dougherty, E. R. & Batman, S., 1999, Proceedings of SPIE - The International Society for Optical Engineering. Society of Photo-Optical Instrumentation Engineers, p. 422-428 7 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 3602).

    Producción científica: Conference contribution

  • 1996

    Behavior of adaptive digital erosions

    Cuciurean-Zapan, C., Dougherty, E. R. & Chen, Y., 1996, Proceedings of SPIE - The International Society for Optical Engineering. Dougherty, E. R., Preteux, F. & Davidson, J. L. (eds.). p. 100-108 9 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2823).

    Producción científica: Conference contribution

    1 Cita (Scopus)
  • 1995

    Adaptive multiparameter openings

    Chen, Y. & Dougherty, E. R., 1995, Proceedings of SPIE - The International Society for Optical Engineering. Dougherty, E. R., Astola, J. T., Longbotham, H. G., Nasrabadi, N. M. & Katsaggelos, A. K. (eds.). p. 37-47 11 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2424).

    Producción científica: Conference contribution

  • Texture-region coding based on Boolean random sets

    Dougherty, E. R., Handley, J. C. & Chen, Y., 1995, Proceedings of SPIE - The International Society for Optical Engineering. Casasent, D. P. (ed.). p. 74-79 6 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 2588).

    Producción científica: Conference contribution

  • 1992

    Detection of osteoporosis by morphological granulometries

    Dougherty, E. R., Chen, Y., Totterman, S. M. D. & Hornak, J. P., 1992, Proceedings of SPIE - The International Society for Optical Engineering. pt 1 ed. Publ by Int Soc for Optical Engineering, p. 666-680 15 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1660, n.º pt 1).

    Producción científica: Conference contribution

    5 Citas (Scopus)

  • Texture classification by gray-scale morphological granulometries

    Chen, Y. & Dougherty, E. R., 1992, Proceedings of SPIE - The International Society for Optical Engineering. pt 2 ed. Publ by Int Soc for Optical Engineering, p. 931-942 12 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1818, n.º pt 2).

    Producción científica: Conference contribution

    9 Citas (Scopus)
  • 1991

    Morphological pattern-spectra-based Tau-opening optimization

    Dougherty, E. R., Haralick, R. M., Chen, Y., Li, B., Agerskov, C., Jacobi, U. & Sloth, P. H., 1991, Proceedings of SPIE - The International Society for Optical Engineering. pt 1 ed. Publ by Int Soc for Optical Engineering, p. 141-152 12 p. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 1606, n.º pt 1).

    Producción científica: Conference contribution

    4 Citas (Scopus)