Department of Population Health Sciences

Resultados de la búsqueda

• XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation

  Liu, Y. (Creator), Wu, P. (Creator), Zhou, J. (Creator), Johnson-Pais, T. L. (Creator), Lai, Z. (Creator), Chowdhury, W. H. (Creator), Rodriguez, R. (Creator) & Chen, Y. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3895993, https://springernature.figshare.com/collections/XBSeq2_a_fast_and_accurate_quantification_of_differential_expression_and_differential_polyadenylation/3895993

  Dataset

• Additional file 31: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288402, https://springernature.figshare.com/articles/Additional_file_31_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288402

  Dataset

• shinyDeepDR: a user-friendly R Shiny app for predicting anti-cancer drug response using deep learning

  Wang, L.-J. (Creator), Ning, M. (Creator), Nayak, T. (Creator), Kasper, M. J. (Contributor), Monga, S. P. (Creator), Huang, Y. (Creator), Chen, Y. (Creator) & Chiu, Y.-C. (Creator), Figshare, 2024

  DOI: 10.6084/m9.figshare.23925255.v2, https://figshare.com/articles/software/_b_shinyDeepDR_a_user-friendly_R_Shiny_app_for_predicting_anti-cancer_drug_response_using_deep_learning_b_/23925255/2

  Dataset

• CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

  Mostavi, M. (Creator), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor) & Huang, Y. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5422418.v1, https://springernature.figshare.com/collections/CancerSiamese_one-shot_learning_for_predicting_primary_and_metastatic_tumor_types_unseen_during_model_training/5422418/1

  Dataset

• MOESM2 of An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data

  Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.11479425.v1, https://springernature.figshare.com/articles/MOESM2_of_An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/11479425/1

  Dataset

• In-office, in-home, and telehealth cognitive processing therapy for posttraumatic stress disorder in veterans: a randomized clinical trial

  Peterson, A. L. (Creator), Mintz, J. (Creator), Moring, J. C. (Creator), Straud, C. L. (Creator), Young-McCaughan, S. (Creator), McGeary, C. A. (Creator), McGeary, D. D. (Creator), Litz, B. T. (Creator), Velligan, D. I. (Creator), Macdonald, A. (Creator), Mata-Galan, E. (Creator), Holliday, S. L. (Creator), Dillon, K. H. (Creator), Roache, J. D. (Creator), Bira, L. M. (Creator), Nabity, P. S. (Creator), Medellin, E. M. (Creator), Hale, W. J. (Creator) & Resick, P. A. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.c.5796721.v1, https://springernature.figshare.com/collections/In-office_in-home_and_telehealth_cognitive_processing_therapy_for_posttraumatic_stress_disorder_in_veterans_a_randomized_clinical_trial/5796721/1

  Dataset

• SETDB1 interactions with PELP1 contributes to breast cancer endocrine therapy resistance

  Liu, Z. (Creator), Liu, J. (Creator), Ebrahimi, B. (Creator), Pratap, U. P. (Creator), He, Y. (Creator), Altwegg, K. A. (Creator), Tang, W. (Creator), Li, X. (Creator), Lai, Z. (Creator), Chen, Y. (Creator), Shen, L. (Creator), Sareddy, G. R. (Creator), Viswanadhapalli, S. (Creator), Tekmal, R. R. (Creator), Rao, M. K. (Creator) & Vadlamudi, R. K. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.c.5939816.v1, https://springernature.figshare.com/collections/SETDB1_interactions_with_PELP1_contributes_to_breast_cancer_endocrine_therapy_resistance/5939816/1

  Dataset

• Maternal diabetes and obesity influence the fetal epigenome in a largely Hispanic population

  Rizzo, H. E. (Creator), Escaname, E. N. (Creator), Alana, N. B. (Creator), Lavender, E. (Creator), Gelfond, J. (Creator), Fernandez, R. (Creator), Hibbs, M. A. (Creator), King, J. M. (Creator), Carr, N. R. (Creator) & Blanco, C. L. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.4863873.v1, https://springernature.figshare.com/collections/Maternal_diabetes_and_obesity_influence_the_fetal_epigenome_in_a_largely_Hispanic_population/4863873/1

  Dataset

• The effects of a prolonged exposure workshop with and without consultation on provider and patient outcomes: a randomized implementation trial

  Foa, E. B. (Creator), McLean, C. P. (Creator), Brown, L. A. (Creator), Zang, Y. (Contributor), Rosenfield, D. (Creator), Zandberg, L. J. (Creator), Ealey, W. (Creator), Hanson, B. S. (Creator), Hunter, L. R. (Creator), Lillard, I. J. (Contributor), Patterson, T. J. (Creator), Rosado, J. (Creator), Scott, V. (Creator), Weber, C. (Creator), Wise, J. E. (Creator), Zamora, C. D. (Creator), Mintz, J. (Creator), Young-Mccaughan, S. (Contributor) & Peterson, A. L. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5077398.v1, https://springernature.figshare.com/collections/The_effects_of_a_prolonged_exposure_workshop_with_and_without_consultation_on_provider_and_patient_outcomes_a_randomized_implementation_trial/5077398/1

  Dataset

• Additional file 25: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288381.v1, https://springernature.figshare.com/articles/Additional_file_25_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288381/1

  Dataset

• Age-associated genes in human mammary gland drive human breast cancer progression

  Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5022674.v1, https://springernature.figshare.com/collections/Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/5022674/1

  Dataset

• Additional file 13 of Age-associated genes in human mammary gland drive human breast cancer progression

  Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12487349.v1, https://springernature.figshare.com/articles/Additional_file_13_of_Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/12487349/1

  Dataset

• XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation

  Liu, Y. (Creator), Wu, P. (Creator), Zhou, J. (Creator), Johnson-Pais, T. L. (Creator), Lai, Z. (Creator), Chowdhury, W. H. (Creator), Rodriguez, R. (Creator) & Chen, Y. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3895993.v1, https://springernature.figshare.com/collections/XBSeq2_a_fast_and_accurate_quantification_of_differential_expression_and_differential_polyadenylation/3895993/1

  Dataset

• Additional file 3: Figure S3. of A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data

  Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3645446_d2.v1, https://springernature.figshare.com/articles/figure/Additional_file_3_Figure_S3_of_A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/4472078/1

  Dataset

• A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data

  Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3645446.v1, https://figshare.com/collections/A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/3645446/1

  Dataset

• Additional file 3: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163938.v1, https://springernature.figshare.com/articles/Additional_file_3_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163938/1

  Dataset

• Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4545548.v1, https://springernature.figshare.com/collections/Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/4545548/1

  Dataset

• Additional file 1: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163923.v1, https://springernature.figshare.com/articles/Additional_file_1_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163923/1

  Dataset

• Additional file 13: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288333.v1, https://springernature.figshare.com/articles/Additional_file_13_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288333/1

  Dataset

• Additional file 4: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163944.v1, https://springernature.figshare.com/articles/Additional_file_4_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163944/1

  Dataset

• Additional file 18: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. N. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. C. H. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288354.v1, https://springernature.figshare.com/articles/Additional_file_18_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288354/1

  Dataset

• Additional file 12: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288324.v1, https://springernature.figshare.com/articles/Additional_file_12_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288324/1

  Dataset

• Additional file 23: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288372.v1, https://springernature.figshare.com/articles/Additional_file_23_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288372/1

  Dataset

• Additional file 27: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288387.v1, https://springernature.figshare.com/articles/Additional_file_27_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288387/1

  Dataset

• GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

  Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Zhang, T. (Contributor), Zhang, S. (Contributor), Huang, Y. (Contributor) & Chen, Y. (Contributor), Figshare, 2018

  DOI: 10.6084/m9.figshare.c.4345790.v1, https://springernature.figshare.com/collections/GSAE_an_autoencoder_with_embedded_gene-set_nodes_for_genomics_functional_characterization/4345790/1

  Dataset