The Signal Recognition Particle Database (SRPDB)

Niels Larsen; Tore Samuelsson; Christian Zwieb

doi:10.1093/nar/26.1.177

The Signal Recognition Particle Database (SRPDB)

Niels Larsen, Tore Samuelsson, Christian Zwieb

Research output: Contribution to journal › Article › peer-review

33 Scopus citations

Abstract

This release of the SRPDB (signal recognition particle database, http://pegasus.uthct.edu/SRPDB/SRPDB.html) adds four SRP RNA sequences (a total of 99 SRP RNA sequences), 23 SRP protein sequences (a total of 63 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72), and, for the first time, sequences of the alpha subunit of the eukaryotic SRP receptor and its homologous bacterial proteins (a total of 21 sequences). Sequences are offered phylogenetically ordered, annotated with links to the primary databases, and in aligned form. Also downloadable are sample SRP RNA secondary structure diagrams, three-dimensional models of representative SRP RNAs, and search motifs.

Original language	English (US)
Pages (from-to)	177-178
Number of pages	2
Journal	Nucleic acids research
Volume	26
Issue number	1
DOIs	https://doi.org/10.1093/nar/26.1.177
State	Published - Jan 1 1998
Externally published	Yes

ASJC Scopus subject areas

Genetics

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title = "The Signal Recognition Particle Database (SRPDB)",

abstract = "This release of the SRPDB (signal recognition particle database, http://pegasus.uthct.edu/SRPDB/SRPDB.html) adds four SRP RNA sequences (a total of 99 SRP RNA sequences), 23 SRP protein sequences (a total of 63 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72), and, for the first time, sequences of the alpha subunit of the eukaryotic SRP receptor and its homologous bacterial proteins (a total of 21 sequences). Sequences are offered phylogenetically ordered, annotated with links to the primary databases, and in aligned form. Also downloadable are sample SRP RNA secondary structure diagrams, three-dimensional models of representative SRP RNAs, and search motifs.",

author = "Niels Larsen and Tore Samuelsson and Christian Zwieb",

note = "Funding Information: N.L. was supported by the Center for Microbial Ecology at Michigan State University (DEB #9120006), T.S. by grant B-BU 9676-311 from the Swedish Natural Science Research Council, and C.Z. by NIH grant GM-49034. We also thank the Free Software Foundation and Larry Wall for their excellent software. Copyright: Copyright 2007 Elsevier B.V., All rights reserved.",

year = "1998",

month = jan,

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doi = "10.1093/nar/26.1.177",

language = "English (US)",

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journal = "Nucleic Acids Research",

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T1 - The Signal Recognition Particle Database (SRPDB)

AU - Larsen, Niels

AU - Samuelsson, Tore

AU - Zwieb, Christian

N1 - Funding Information: N.L. was supported by the Center for Microbial Ecology at Michigan State University (DEB #9120006), T.S. by grant B-BU 9676-311 from the Swedish Natural Science Research Council, and C.Z. by NIH grant GM-49034. We also thank the Free Software Foundation and Larry Wall for their excellent software. Copyright: Copyright 2007 Elsevier B.V., All rights reserved.

PY - 1998/1/1

Y1 - 1998/1/1

N2 - This release of the SRPDB (signal recognition particle database, http://pegasus.uthct.edu/SRPDB/SRPDB.html) adds four SRP RNA sequences (a total of 99 SRP RNA sequences), 23 SRP protein sequences (a total of 63 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72), and, for the first time, sequences of the alpha subunit of the eukaryotic SRP receptor and its homologous bacterial proteins (a total of 21 sequences). Sequences are offered phylogenetically ordered, annotated with links to the primary databases, and in aligned form. Also downloadable are sample SRP RNA secondary structure diagrams, three-dimensional models of representative SRP RNAs, and search motifs.

AB - This release of the SRPDB (signal recognition particle database, http://pegasus.uthct.edu/SRPDB/SRPDB.html) adds four SRP RNA sequences (a total of 99 SRP RNA sequences), 23 SRP protein sequences (a total of 63 protein sequences from SRP9, SRP14, SRP19, SRP21, SRP54, SRP68 or SRP72), and, for the first time, sequences of the alpha subunit of the eukaryotic SRP receptor and its homologous bacterial proteins (a total of 21 sequences). Sequences are offered phylogenetically ordered, annotated with links to the primary databases, and in aligned form. Also downloadable are sample SRP RNA secondary structure diagrams, three-dimensional models of representative SRP RNAs, and search motifs.

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