The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Dominik Kopczynski; Christer S. Ejsing; Jeffrey G. McDonald; Takeshi Bamba; Erin S. Baker; Justine Bertrand-Michel; Britta Brügger; Cristina Coman; Shane R. Ellis; Timothy J. Garrett; William J. Griffiths; Xue Li Guan; Xianlin Han; Marcus Höring; Michal Holčapek; Nils Hoffmann; Kevin Huynh; Rainer Lehmann; Jace W. Jones; Rima Kaddurah-Daouk; Harald C. Köfeler; Peter J. Meikle; Thomas O. Metz; Valerie B. O’Donnell; Daisuke Saigusa; Dominik Schwudke; Andrej Shevchenko; Federico Torta; Juan Antonio Vizcaíno; Ruth Welti; Markus R. Wenk; Denise Wolrab; Yu Xia; Kim Ekroos; Robert Ahrends; Gerhard Liebisch

doi:10.1016/j.jlr.2024.100621

The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Dominik Kopczynski
, Christer S. Ejsing
, Jeffrey G. McDonald
, Takeshi Bamba
, Erin S. Baker
, Justine Bertrand-Michel
, Britta Brügger
, Cristina Coman
, Shane R. Ellis
, Timothy J. Garrett
, William J. Griffiths
, Xue Li Guan
, Xianlin Han
, Marcus Höring
, Michal Holčapek
, Nils Hoffmann
, Kevin Huynh
, Rainer Lehmann
, Jace W. Jones
, Rima Kaddurah-Daouk

Harald C. Köfeler, Peter J. Meikle, Thomas O. Metz, Valerie B. O’Donnell, Daisuke Saigusa, Dominik Schwudke, Andrej Shevchenko, Federico Torta, Juan Antonio Vizcaíno, Ruth Welti, Markus R. Wenk, Denise Wolrab, Yu Xia, Kim Ekroos, Robert Ahrends, Gerhard Liebisch

Research output: Contribution to journal › Article › peer-review

29 Scopus citations

Abstract

The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.

Original language	English (US)
Article number	100621
Journal	Journal of lipid research
Volume	65
Issue number	9
DOIs	https://doi.org/10.1016/j.jlr.2024.100621
State	Published - Sep 2024

Keywords

FAIR
checklist
lipid metabolism
lipidomics
mass spectrometry
metabolomics
quality control
reference standards

ASJC Scopus subject areas

Biochemistry
Endocrinology
Cell Biology

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10.1016/j.jlr.2024.100621

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Kopczynski, D., Ejsing, C. S., McDonald, J. G., Bamba, T., Baker, E. S., Bertrand-Michel, J., Brügger, B., Coman, C., Ellis, S. R., Garrett, T. J., Griffiths, W. J., Guan, X. L., Han, X., Höring, M., Holčapek, M., Hoffmann, N., Huynh, K., Lehmann, R., Jones, J. W., ... Liebisch, G. (2024). The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data. Journal of lipid research, 65(9), Article 100621. https://doi.org/10.1016/j.jlr.2024.100621

Kopczynski, D, Ejsing, CS, McDonald, JG, Bamba, T, Baker, ES, Bertrand-Michel, J, Brügger, B, Coman, C, Ellis, SR, Garrett, TJ, Griffiths, WJ, Guan, XL, Han, X, Höring, M, Holčapek, M, Hoffmann, N, Huynh, K, Lehmann, R, Jones, JW, Kaddurah-Daouk, R, Köfeler, HC, Meikle, PJ, Metz, TO, O’Donnell, VB, Saigusa, D, Schwudke, D, Shevchenko, A, Torta, F, Vizcaíno, JA, Welti, R, Wenk, MR, Wolrab, D, Xia, Y, Ekroos, K, Ahrends, R & Liebisch, G 2024, 'The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data', Journal of lipid research, vol. 65, no. 9, 100621. https://doi.org/10.1016/j.jlr.2024.100621

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abstract = "The rapid increase in lipidomic studies has led to a collaborative effort within the community to establish standards and criteria for producing, documenting, and disseminating data. Creating a dynamic easy-to-use checklist that condenses key information about lipidomic experiments into common terminology will enhance the field's consistency, comparability, and repeatability. Here, we describe the structure and rationale of the established Lipidomics Minimal Reporting Checklist to increase transparency in lipidomics research.",

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author = "Dominik Kopczynski and Ejsing, \{Christer S.\} and McDonald, \{Jeffrey G.\} and Takeshi Bamba and Baker, \{Erin S.\} and Justine Bertrand-Michel and Britta Br{\"u}gger and Cristina Coman and Ellis, \{Shane R.\} and Garrett, \{Timothy J.\} and Griffiths, \{William J.\} and Guan, \{Xue Li\} and Xianlin Han and Marcus H{\"o}ring and Michal Hol{\v c}apek and Nils Hoffmann and Kevin Huynh and Rainer Lehmann and Jones, \{Jace W.\} and Rima Kaddurah-Daouk and K{\"o}feler, \{Harald C.\} and Meikle, \{Peter J.\} and Metz, \{Thomas O.\} and O{\textquoteright}Donnell, \{Valerie B.\} and Daisuke Saigusa and Dominik Schwudke and Andrej Shevchenko and Federico Torta and Vizca{\'i}no, \{Juan Antonio\} and Ruth Welti and Wenk, \{Markus R.\} and Denise Wolrab and Yu Xia and Kim Ekroos and Robert Ahrends and Gerhard Liebisch",

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year = "2024",

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doi = "10.1016/j.jlr.2024.100621",

language = "English (US)",

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AU - Bamba, Takeshi

AU - Baker, Erin S.

AU - Bertrand-Michel, Justine

AU - Brügger, Britta

AU - Coman, Cristina

AU - Ellis, Shane R.

AU - Garrett, Timothy J.

AU - Griffiths, William J.

AU - Guan, Xue Li

AU - Han, Xianlin

AU - Höring, Marcus

AU - Holčapek, Michal

AU - Hoffmann, Nils

AU - Huynh, Kevin

AU - Lehmann, Rainer

AU - Jones, Jace W.

AU - Kaddurah-Daouk, Rima

AU - Köfeler, Harald C.

AU - Meikle, Peter J.

AU - Metz, Thomas O.

AU - O’Donnell, Valerie B.

AU - Saigusa, Daisuke

AU - Schwudke, Dominik

AU - Shevchenko, Andrej

AU - Torta, Federico

AU - Vizcaíno, Juan Antonio

AU - Welti, Ruth

AU - Wenk, Markus R.

AU - Wolrab, Denise

AU - Xia, Yu

AU - Ekroos, Kim

AU - Ahrends, Robert

AU - Liebisch, Gerhard

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KW - mass spectrometry

KW - metabolomics

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The lipidomics reporting checklist a framework for transparency of lipidomic experiments and repurposing resource data

Abstract

Keywords

ASJC Scopus subject areas

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