The 57 kb deletion in cystinosis patients extends into TRPV1 causing dysregulation of transcription in peripheral blood mononuclear cells

Katy A. Freed, John Blangero, Tom Howard, Matthew P. Johnson, Joanne E. Curran, Yvonne R. Garcia, Hao Chang Lan, Hanna E. Abboud, Eric K. Moses

Research output: Contribution to journalArticle

12 Citations (Scopus)

Abstract

Background: Cystinosis is an autosomal recessive disease characterised by the abnormal accumulation of lysosomal cystine. Mutations in the cystinosin gene (CTNS) represent known causes for the disease. The major cystinosis mutation is a 57 kb deletion on human chromosome 17p13 that removes the majority of CTNS and the entire adjacent gene, CARKL/SHPK. Objectives: In order to identify other genes that may influence the cystinosis pathobiological pathway, peripheral blood mononuclear cells (PBMC) were collected from cystinosis family members, and DNA and RNA extracted. Results: Using whole genome transcriptional profiling, transient receptor potential vanilloid 1 (TRPV1) was found to be differentially expressed in association with cystinosis. This was verified using TaqMan qRT-PCR. There was a 72% reduction in PBMC TRPV1 mRNA levels in cystinosis individuals homozygous for the 57 kb deletion (n=6) compared to unaffected individuals without the deletion (n=6) (p=0.002). TRPV1 is a sensory receptor located on chromosome 17p13, adjacent to CARKL/SHPK. It was ascertained that the 57 kb deletion extends from exon 10 of CTNS, upstream through CARKL/SHPK, to intron 2 of TRPV1, thus deleting the first two non-coding exons. Conclusion: This is the first study to report that the 57 kb deletion extends into the TRPV1 gene causing dysregulation of transcription in PBMC isolated from cystinosis patients.

Original languageEnglish (US)
Pages (from-to)563-566
Number of pages4
JournalJournal of Medical Genetics
Volume48
Issue number8
DOIs
StatePublished - Aug 2011

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Cystinosis
Blood Cells
Genes
Exons
Mutation
Cystine
Human Chromosomes
Sensory Receptor Cells
vanilloid receptor subtype 1
Introns
Chromosomes
Genome
RNA
Polymerase Chain Reaction
Messenger RNA
DNA

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)

Cite this

The 57 kb deletion in cystinosis patients extends into TRPV1 causing dysregulation of transcription in peripheral blood mononuclear cells. / Freed, Katy A.; Blangero, John; Howard, Tom; Johnson, Matthew P.; Curran, Joanne E.; Garcia, Yvonne R.; Lan, Hao Chang; Abboud, Hanna E.; Moses, Eric K.

In: Journal of Medical Genetics, Vol. 48, No. 8, 08.2011, p. 563-566.

Research output: Contribution to journalArticle

Freed, KA, Blangero, J, Howard, T, Johnson, MP, Curran, JE, Garcia, YR, Lan, HC, Abboud, HE & Moses, EK 2011, 'The 57 kb deletion in cystinosis patients extends into TRPV1 causing dysregulation of transcription in peripheral blood mononuclear cells', Journal of Medical Genetics, vol. 48, no. 8, pp. 563-566. https://doi.org/10.1136/jmg.2010.083303
Freed, Katy A. ; Blangero, John ; Howard, Tom ; Johnson, Matthew P. ; Curran, Joanne E. ; Garcia, Yvonne R. ; Lan, Hao Chang ; Abboud, Hanna E. ; Moses, Eric K. / The 57 kb deletion in cystinosis patients extends into TRPV1 causing dysregulation of transcription in peripheral blood mononuclear cells. In: Journal of Medical Genetics. 2011 ; Vol. 48, No. 8. pp. 563-566.
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abstract = "Background: Cystinosis is an autosomal recessive disease characterised by the abnormal accumulation of lysosomal cystine. Mutations in the cystinosin gene (CTNS) represent known causes for the disease. The major cystinosis mutation is a 57 kb deletion on human chromosome 17p13 that removes the majority of CTNS and the entire adjacent gene, CARKL/SHPK. Objectives: In order to identify other genes that may influence the cystinosis pathobiological pathway, peripheral blood mononuclear cells (PBMC) were collected from cystinosis family members, and DNA and RNA extracted. Results: Using whole genome transcriptional profiling, transient receptor potential vanilloid 1 (TRPV1) was found to be differentially expressed in association with cystinosis. This was verified using TaqMan qRT-PCR. There was a 72{\%} reduction in PBMC TRPV1 mRNA levels in cystinosis individuals homozygous for the 57 kb deletion (n=6) compared to unaffected individuals without the deletion (n=6) (p=0.002). TRPV1 is a sensory receptor located on chromosome 17p13, adjacent to CARKL/SHPK. It was ascertained that the 57 kb deletion extends from exon 10 of CTNS, upstream through CARKL/SHPK, to intron 2 of TRPV1, thus deleting the first two non-coding exons. Conclusion: This is the first study to report that the 57 kb deletion extends into the TRPV1 gene causing dysregulation of transcription in PBMC isolated from cystinosis patients.",
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