SNPCEQer II: the integrated detection and analysis of SNPs in DNA sequences.

Fuqiang Tang, Elizabeth M. Flood, Alexander Pertsemlidis, Harold R. Garner

Research output: Contribution to journalArticle

Abstract

SNPCEQer II is a graphical user interface (GUI)-based application that integrates single nucleotide polymorphism (SNP) detection, SNP analysis and SNP editing in the Microsoft Windows (R) environment. SNPCEQer II detects SNPs in DNA sequences generated by the Beckman CEQ TM 2000 XL DNA analysis system. It provides tools to analyse SNPs by inspecting and comparing trace data (chromatograms) around putative SNPs with that of other related DNA sequences, and it can search for those SNPs in the National Center for Biotechnology Information (NCBI) databases. SNPCEQer II can determine the mutation type of a coding SNP and generate data for submission to the dbSNP database. The SNP report can be edited and printed, as can the chromatograms. SNPCEQer II is implemented in Visual C++.

Original languageEnglish (US)
Pages (from-to)151-154
Number of pages4
JournalApplied bioinformatics
Volume2
Issue number3
Publication statusPublished - 2003

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ASJC Scopus subject areas

  • Information Systems
  • Agricultural and Biological Sciences(all)
  • Computer Science Applications

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