Rapid screening of phenotypic resistance to nevirapine by direct analysis of HIV type 1 reverse transcriptase activity in plasma

Guillermo Vázquez-Rosales, J. Gerardo García Lerma, Shinji Yamamoto, William M. Switzer, Diane Havlir, Thomas M. Folks, Douglas D. Richman, Walid Heneine

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    Abstract

    Drug susceptibility testing for the clinical management of human immunodeficiency virus type 1 (HIV-1)-infected persons is often curtailed because such testing is expensive and time consuming. We describe a nonculture-based phenotypic assay for the rapid analysis of HIV-1 resistance to nevirapine. The assay measures the susceptibility of plasma reverse transcriptase (RT) activity to inhibition by nevirapine by using the PCR- based Amp-RT assay. Assay validation was made using two reference wild-type (WT) and six other nevirapine-resistant (>100-fold) HIV-1 isolates. Amp-RT IC50 values were found to correlate with those obtained by a conventional replication-based assay. The results also indicated that 50 μM nevirapine can be used in a single screening test to detect nevirapine resistance. Analysis of virus mixtures showed a detection threshold of 10% of nevirapine- resistant HIV-1 in a background of WT virus. To evaluate the assay on clinical samples, 30 plasma specimens collected longitudinally from 4 patients before and after treatment with nevirapine were analyzed, and results were compared with codon 181 genotypes. Pretreatment samples and those obtained during the first 6 days of therapy (n = 21) were sensitive to nevirapine, and none had detectable Y181C mutation. Phenotypic resistance was seen in eight samples obtained after 1 week of treatment and was correlated with detection of the Y181C mutation. An increase in the level of phenotypic resistance was seen over time. These data validate this rapid and simple assay for monitoring phenotypic resistance to nevirapine.

    Original languageEnglish (US)
    Pages (from-to)1191-1200
    Number of pages10
    JournalAIDS Research and Human Retroviruses
    Volume15
    Issue number13
    DOIs
    StatePublished - Sep 1 1999

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    ASJC Scopus subject areas

    • Immunology
    • Virology
    • Infectious Diseases

    Cite this

    Vázquez-Rosales, G., García Lerma, J. G., Yamamoto, S., Switzer, W. M., Havlir, D., Folks, T. M., Richman, D. D., & Heneine, W. (1999). Rapid screening of phenotypic resistance to nevirapine by direct analysis of HIV type 1 reverse transcriptase activity in plasma. AIDS Research and Human Retroviruses, 15(13), 1191-1200. https://doi.org/10.1089/088922299310287