Neuroimaging data sharing on the neuroinformatics database platform

Gregory A. Book; Michael C. Stevens; Michal Assaf; David C. Glahn; Godfrey D. Pearlson

doi:10.1016/j.neuroimage.2015.04.022

Neuroimaging data sharing on the neuroinformatics database platform

Gregory A. Book, Michael C. Stevens, Michal Assaf, David C. Glahn, Godfrey D. Pearlson

Radiology

Research output: Contribution to journal › Article › peer-review

7 Scopus citations

Abstract

We describe the Neuroinformatics Database (NiDB), an open-source database platform for archiving, analysis, and sharing of neuroimaging data. Data from the multi-site projects Autism Brain Imaging Data Exchange (ABIDE), Bipolar-Schizophrenia Network on Intermediate Phenotypes parts one and two (B-SNIP1, B-SNIP2), and Monetary Incentive Delay task (MID) are available for download from the public instance of NiDB, with more projects sharing data as it becomes available. As demonstrated by making several large datasets available, NiDB is an extensible platform appropriately suited to archive and distribute shared neuroimaging data.

Original language	English (US)
Pages (from-to)	1089-1092
Number of pages	4
Journal	NeuroImage
Volume	124
DOIs	https://doi.org/10.1016/j.neuroimage.2015.04.022
State	Published - Jan 1 2016

ASJC Scopus subject areas

Neurology
Cognitive Neuroscience

Access to Document

10.1016/j.neuroimage.2015.04.022

Fingerprint Dive into the research topics of 'Neuroimaging data sharing on the neuroinformatics database platform'. Together they form a unique fingerprint.

Cite this

@article{0c7208870385490b84c7df272dc11f22,

title = "Neuroimaging data sharing on the neuroinformatics database platform",

abstract = "We describe the Neuroinformatics Database (NiDB), an open-source database platform for archiving, analysis, and sharing of neuroimaging data. Data from the multi-site projects Autism Brain Imaging Data Exchange (ABIDE), Bipolar-Schizophrenia Network on Intermediate Phenotypes parts one and two (B-SNIP1, B-SNIP2), and Monetary Incentive Delay task (MID) are available for download from the public instance of NiDB, with more projects sharing data as it becomes available. As demonstrated by making several large datasets available, NiDB is an extensible platform appropriately suited to archive and distribute shared neuroimaging data.",

author = "Book, {Gregory A.} and Stevens, {Michael C.} and Michal Assaf and Glahn, {David C.} and Pearlson, {Godfrey D.}",

note = "Funding Information: NiDB is maintained by the Olin Neuropsychiatry Research Center (ONRC), and supported both internally and by data sharing grants. The long term goals for development of NiDB are increasing performance, reliability, and efficiency of the system and increasing the user-base. More significant long term goals include porting the pipeline system to run on Amazon Web Services (AWS), a cloud computing platform ( Services, 2015 ). Using StarCluster, we intend to create a dynamic compute cluster attached to NiDB within AWS that would stand in place of the computer cluster at the ONRC ( MIT, 2015 ).",

year = "2016",

month = jan,

day = "1",

doi = "10.1016/j.neuroimage.2015.04.022",

language = "English (US)",

volume = "124",

pages = "1089--1092",

journal = "NeuroImage",

issn = "1053-8119",

publisher = "Academic Press Inc.",

}

TY - JOUR

T1 - Neuroimaging data sharing on the neuroinformatics database platform

AU - Book, Gregory A.

AU - Stevens, Michael C.

AU - Assaf, Michal

AU - Glahn, David C.

AU - Pearlson, Godfrey D.

N1 - Funding Information: NiDB is maintained by the Olin Neuropsychiatry Research Center (ONRC), and supported both internally and by data sharing grants. The long term goals for development of NiDB are increasing performance, reliability, and efficiency of the system and increasing the user-base. More significant long term goals include porting the pipeline system to run on Amazon Web Services (AWS), a cloud computing platform ( Services, 2015 ). Using StarCluster, we intend to create a dynamic compute cluster attached to NiDB within AWS that would stand in place of the computer cluster at the ONRC ( MIT, 2015 ).

PY - 2016/1/1

Y1 - 2016/1/1

N2 - We describe the Neuroinformatics Database (NiDB), an open-source database platform for archiving, analysis, and sharing of neuroimaging data. Data from the multi-site projects Autism Brain Imaging Data Exchange (ABIDE), Bipolar-Schizophrenia Network on Intermediate Phenotypes parts one and two (B-SNIP1, B-SNIP2), and Monetary Incentive Delay task (MID) are available for download from the public instance of NiDB, with more projects sharing data as it becomes available. As demonstrated by making several large datasets available, NiDB is an extensible platform appropriately suited to archive and distribute shared neuroimaging data.

AB - We describe the Neuroinformatics Database (NiDB), an open-source database platform for archiving, analysis, and sharing of neuroimaging data. Data from the multi-site projects Autism Brain Imaging Data Exchange (ABIDE), Bipolar-Schizophrenia Network on Intermediate Phenotypes parts one and two (B-SNIP1, B-SNIP2), and Monetary Incentive Delay task (MID) are available for download from the public instance of NiDB, with more projects sharing data as it becomes available. As demonstrated by making several large datasets available, NiDB is an extensible platform appropriately suited to archive and distribute shared neuroimaging data.

UR - http://www.scopus.com/inward/record.url?scp=84949316318&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84949316318&partnerID=8YFLogxK

U2 - 10.1016/j.neuroimage.2015.04.022

DO - 10.1016/j.neuroimage.2015.04.022

M3 - Article

C2 - 25888923

AN - SCOPUS:84949316318

VL - 124

SP - 1089

EP - 1092

JO - NeuroImage

JF - NeuroImage

SN - 1053-8119

ER -