MPSQ

A web tool for protein-state searching

Siyuan Zheng, Jia Sheng, Chuan Wang, Xiaojing Wang, Yao Yu, Yun Li, Alex Michie, Jianliang Dai, Yang Zhong, Pei Hao, Lei Liu, Yixue Li

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

Summary: MPSQ (multi-protein-states query) is a web-based tool for the discovery of protein states (e.g. biological interactions, covalent modifications, cellular localizations). In particular, large sets of genes can be used to search for enriched state transition network maps (NMs) and features facilitating the interpretation of genomic-scale experiments such as microarrays. One NM collects all the catalogued states of a protein as well as the mutual transitions between the states. For the returned NM, graph visualization is provided for easy understanding and to guide further analysis.

Original languageEnglish (US)
Pages (from-to)2412-2413
Number of pages2
JournalBioinformatics
Volume24
Issue number20
DOIs
StatePublished - Oct 1 2008
Externally publishedYes

Fingerprint

Query
Proteins
Protein
State Transition
Microarrays
Microarray
Large Set
Web-based
Genomics
Visualization
Genes
Gene
Graph in graph theory
Interaction
Experiment
Experiments
Interpretation

ASJC Scopus subject areas

  • Statistics and Probability
  • Biochemistry
  • Molecular Biology
  • Computer Science Applications
  • Computational Theory and Mathematics
  • Computational Mathematics

Cite this

Zheng, S., Sheng, J., Wang, C., Wang, X., Yu, Y., Li, Y., ... Li, Y. (2008). MPSQ: A web tool for protein-state searching. Bioinformatics, 24(20), 2412-2413. https://doi.org/10.1093/bioinformatics/btn427

MPSQ : A web tool for protein-state searching. / Zheng, Siyuan; Sheng, Jia; Wang, Chuan; Wang, Xiaojing; Yu, Yao; Li, Yun; Michie, Alex; Dai, Jianliang; Zhong, Yang; Hao, Pei; Liu, Lei; Li, Yixue.

In: Bioinformatics, Vol. 24, No. 20, 01.10.2008, p. 2412-2413.

Research output: Contribution to journalArticle

Zheng, S, Sheng, J, Wang, C, Wang, X, Yu, Y, Li, Y, Michie, A, Dai, J, Zhong, Y, Hao, P, Liu, L & Li, Y 2008, 'MPSQ: A web tool for protein-state searching', Bioinformatics, vol. 24, no. 20, pp. 2412-2413. https://doi.org/10.1093/bioinformatics/btn427
Zheng S, Sheng J, Wang C, Wang X, Yu Y, Li Y et al. MPSQ: A web tool for protein-state searching. Bioinformatics. 2008 Oct 1;24(20):2412-2413. https://doi.org/10.1093/bioinformatics/btn427
Zheng, Siyuan ; Sheng, Jia ; Wang, Chuan ; Wang, Xiaojing ; Yu, Yao ; Li, Yun ; Michie, Alex ; Dai, Jianliang ; Zhong, Yang ; Hao, Pei ; Liu, Lei ; Li, Yixue. / MPSQ : A web tool for protein-state searching. In: Bioinformatics. 2008 ; Vol. 24, No. 20. pp. 2412-2413.
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