ILM: A web server for predicting RNA secondary structures with pseudoknots

Jianhua Ruan, Gary D. Stormo, Weixiong Zhang

    Research output: Contribution to journalArticlepeer-review

    23 Scopus citations

    Abstract

    The ILM web server provides a web interface to two algorithms, iterated loop matching and maximum weighted matching, for efficiently predicting RNA secondary structures with pseudoknots. The algorithms can utilize either thermodynamic or comparative information or both, and thus can work on both aligned and individual sequences. Predicted secondary structures are presented in several formats compatible with a variety of existing visualization tools. The service can be accessed at http://cic.cs.wustl.edu/RNA/.

    Original languageEnglish (US)
    Pages (from-to)W146-W149
    JournalNucleic acids research
    Volume32
    Issue numberWEB SERVER ISS.
    DOIs
    StatePublished - Jul 1 2004

    ASJC Scopus subject areas

    • Genetics

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