Coelomycetous fungi in the clinical setting: Morphological convergence and cryptic diversity

Nicomedes Valenzuela-Lopez, Deanna A. Sutton, José F. Cano-Lira, Katihuska Paredes, Nathan Wiederhold, Josep Guarro, Alberto M. Stchigel

Research output: Contribution to journalArticle

17 Citations (Scopus)

Abstract

Human infections by coelomycetous fungi are becoming more frequent and range from superficial to systemic dissemination. Traumatic implantation of contaminated plant material is the most common cause. The typical morphological feature of these fungi is the production of asexual spores (conidia) within fruiting bodies called conidiomata. This study aimed to determine the distribution of the coelomycetes in clinical samples by a phenotypic and molecular study of a large set of isolates received from a U.S. Reference mycological institution and by obtaining the in vitro antifungal susceptibility pattern of nine antifungals against a selected group of isolates. A total of 230 isolates were identified by sequencing the D1 and D2 domains of the large subunit (LSU) nuclear ribosomal RNA (nrRNA) gene and by morphological characterization. Eleven orders of the phylum Ascomycota were identified: Pleosporales (the largest group; 66.1%), Botryosphaeriales (19.57%), Glomerellales (4.35%), Diaporthales (3.48%), Xylariales (2.17%), Hysteriales and Valsariales (0.87%), and Capnodiales, Helotiales, Hypocreales and Magnaporthales (0.43% each). The most prevalent species were Neoscytalidium dimidiatum, Paraconiothyrium spp., Phoma herbarum, Didymella heteroderae, and Epicoccum sorghinum. The most common anatomical site of isolation was superficial tissue (66.5%), followed by the respiratory tract (17.4%). Most of the isolates tested were susceptible to the majority of antifungals, and only flucytosine showed poor antifungal activity.

Original languageEnglish (US)
Pages (from-to)552-567
Number of pages16
JournalJournal of Clinical Microbiology
Volume55
Issue number2
DOIs
StatePublished - Feb 1 2017

Fingerprint

Xylariales
Hypocreales
Flucytosine
Nuclear RNA
Ascomycota
Fungal Spores
Mycoses
Spores
rRNA Genes
Respiratory System
Fungi
In Vitro Techniques

Keywords

  • Antifungal susceptibility
  • Coelomycetes
  • Coelomycetous fungi
  • Colletotrichum
  • Mycosis
  • Neoscytalidium
  • Phoma
  • Pyrenochaeta

ASJC Scopus subject areas

  • Microbiology (medical)

Cite this

Valenzuela-Lopez, N., Sutton, D. A., Cano-Lira, J. F., Paredes, K., Wiederhold, N., Guarro, J., & Stchigel, A. M. (2017). Coelomycetous fungi in the clinical setting: Morphological convergence and cryptic diversity. Journal of Clinical Microbiology, 55(2), 552-567. https://doi.org/10.1128/JCM.02221-16

Coelomycetous fungi in the clinical setting : Morphological convergence and cryptic diversity. / Valenzuela-Lopez, Nicomedes; Sutton, Deanna A.; Cano-Lira, José F.; Paredes, Katihuska; Wiederhold, Nathan; Guarro, Josep; Stchigel, Alberto M.

In: Journal of Clinical Microbiology, Vol. 55, No. 2, 01.02.2017, p. 552-567.

Research output: Contribution to journalArticle

Valenzuela-Lopez, N, Sutton, DA, Cano-Lira, JF, Paredes, K, Wiederhold, N, Guarro, J & Stchigel, AM 2017, 'Coelomycetous fungi in the clinical setting: Morphological convergence and cryptic diversity', Journal of Clinical Microbiology, vol. 55, no. 2, pp. 552-567. https://doi.org/10.1128/JCM.02221-16
Valenzuela-Lopez, Nicomedes ; Sutton, Deanna A. ; Cano-Lira, José F. ; Paredes, Katihuska ; Wiederhold, Nathan ; Guarro, Josep ; Stchigel, Alberto M. / Coelomycetous fungi in the clinical setting : Morphological convergence and cryptic diversity. In: Journal of Clinical Microbiology. 2017 ; Vol. 55, No. 2. pp. 552-567.
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