A genome resource to address mechanisms of developmental programming: Determination of the fetal sheep heart transcriptome

Laura A. Cox, Jeremy P. Glenn, Kimberly D. Spradling, Mark J Nijland, Roy Garcia, Peter W. Nathanielsz, Stephen P. Ford

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

The pregnant sheep has provided seminal insights into reproduction related to animal and human development (ovarian function, fertility, implantation, fetal growth, parturition and lactation). Fetal sheep physiology has been extensively studied since 1950, contributing significantly to the basis for our understanding of many aspects of fetal development and behaviour that remain in use in clinical practice today. Understanding mechanisms requires the combination of systems approaches uniquely available in fetal sheep with the power of genomic studies. Absence of the full range of sheep genomic resources has limited the full realization of the power of this model, impeding progress in emerging areas of pregnancy biology such as developmental programming. We have examined the expressed fetal sheep heart transcriptome using high-throughput sequencing technologies. In so doing we identified 36,737 novel transcripts and describe genes, gene variants and pathways relevant to fundamental developmental mechanisms. Genes with the highest expression levels and with novel exons in the fetal heart transcriptome are known to play central roles in muscle development. We show that high-throughput sequencing methods can generate extensive transcriptome information in the absence of an assembled and annotated genome for that species. The gene sequence data obtained provide a unique genomic resource for sheep specific genetic technology development and, combined with the polymorphism data, augment annotation and assembly of the sheep genome. In addition, identification and pathway analysis of novel fetal sheep heart transcriptome splice variants is a first step towards revealing mechanisms of genetic variation and gene environment interactions during fetal heart development.

Original languageEnglish (US)
Pages (from-to)2873-2884
Number of pages12
JournalJournal of Physiology
Volume590
Issue number12
DOIs
StatePublished - Jun 2012

Fingerprint

Fetal Heart
Transcriptome
Sheep
Genome
Fetal Development
Genes
Gene-Environment Interaction
Muscle Development
Human Development
Lactation
Reproduction
Fertility
Exons
Parturition
Technology
Pregnancy

ASJC Scopus subject areas

  • Physiology

Cite this

A genome resource to address mechanisms of developmental programming : Determination of the fetal sheep heart transcriptome. / Cox, Laura A.; Glenn, Jeremy P.; Spradling, Kimberly D.; Nijland, Mark J; Garcia, Roy; Nathanielsz, Peter W.; Ford, Stephen P.

In: Journal of Physiology, Vol. 590, No. 12, 06.2012, p. 2873-2884.

Research output: Contribution to journalArticle

Cox, Laura A. ; Glenn, Jeremy P. ; Spradling, Kimberly D. ; Nijland, Mark J ; Garcia, Roy ; Nathanielsz, Peter W. ; Ford, Stephen P. / A genome resource to address mechanisms of developmental programming : Determination of the fetal sheep heart transcriptome. In: Journal of Physiology. 2012 ; Vol. 590, No. 12. pp. 2873-2884.
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