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  • Susan E Weintraub
2020

Phage G Structure at 6.1 Å Resolution, Condensed DNA, and Host Identity Revision to a Lysinibacillus

González, B., Monroe, L., Li, K., Yan, R., Wright, E., Walter, T., Kihara, D., Weintraub, S. T., Thomas, J. A., Serwer, P. & Jiang, W., Jun 26 2020, In : Journal of Molecular Biology. 432, 14, p. 4139-4153 15 p.

Research output: Contribution to journalArticle

Open Access
2019

A potential role for lysophosphatidylcholine in the delivery of long chain polyunsaturated fatty acids to the fetal circulation

Ferchaud-Roucher, V., Kramer, A., Silva, E., Pantham, P., Weintraub, S. E., Jansson, T. & Powell, T. L., Mar 1 2019, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1864, 3, p. 394-402 9 p.

Research output: Contribution to journalArticle

5 Scopus citations

Diazepam accelerates GABAAR synaptic exchange and alters intracellular trafficking

Lorenz-Guertin, J. M., Bambino, M. J., Das, S., Weintraub, S. E. & Jacob, T. C., Apr 12 2019, In : Frontiers in Cellular Neuroscience. 13, 163.

Research output: Contribution to journalArticle

Open Access
8 Scopus citations

Estrogen receptor coregulator binding modulator (ERX-11) enhances the activity of CDK4/6 inhibitors against estrogen receptor-positive breast cancers

Viswanadhapalli, S., Ma, S., Sareddy, G. R., Lee, T. K., Li, M., Gilbreath, C., Liu, X., Luo, Y., Pratap, U. P., Zhou, M., Blatt, E. B., Kassees, K., Arteaga, C., Alluri, P., Rao, M., Weintraub, S. T., Tekmal, R. R., Ahn, J. M., Raj, G. V. & Vadlamudi, R. K., Dec 26 2019, In : Breast Cancer Research. 21, 1, 150.

Research output: Contribution to journalArticle

Open Access

Global proteomic profiling of salmonella infection by a Giant phage

Weintraub, S. E., Redzuan, N. H. M., Barton, M. K., Amin, N. A. M., Desmond, M. I., Adams, L. E., Ali, B., Pardo, S., Molleur, D., Wu, W., Newcomb, W. W., Osier, M. V., Black, L. W., Steven, A. C. & Thomas, J. A., Mar 1 2019, In : Journal of Virology. 93, 5, 01833-18.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0

Deutsch, E. W., Lane, L., Overall, C. M., Bandeira, N., Baker, M. S., Pineau, C., Moritz, R. L., Corrales, F., Orchard, S., Van Eyk, J. E., Paik, Y. K., Weintraub, S. T., Vandenbrouck, Y. & Omenn, G. S., Dec 6 2019, In : Journal of Proteome Research. 18, 12, p. 4108-4116 9 p.

Research output: Contribution to journalReview article

10 Scopus citations

iPRG 2019 Metaproteomics Study

Davis, D. L., Palmblad, M. & Weintraub, S. T., Dec 1 2019, In : Journal of biomolecular techniques : JBT. 30, p. S53

Research output: Contribution to journalArticle

Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science

Weintraub, S. T., Hoopmann, M. R. & Palmblad, M., Feb 1 2019, In : Journal of Proteome Research. 18, 2, 1 p.

Research output: Contribution to journalEditorial

1 Scopus citations

The Lung Mucosa Environment in the Elderly Increases Host Susceptibility to Mycobacterium tuberculosis Infection

Moliva, J. I., Duncan, M. A., Olmo-Fontánez, A., Akhter, A., Arnett, E., Scordo, J. M., Ault, R., Sasindran, S. J., Azad, A. K., Montoya, M. J., Reinhold-Larsson, N., Rajaram, M. V. S., Merrit, R. E., Lafuse, W. P., Zhang, L., Wang, S. H., Beamer, G., Wang, Y., Proud, K., Maselli, D. J. & 5 others, Peters, J., Weintraub, S. T., Turner, J., Schlesinger, L. S. & Torrelles, J. B., Jul 2 2019, In : Journal of Infectious Diseases. 220, 3, p. 514-523 10 p., jiz138.

Research output: Contribution to journalArticle

2 Scopus citations
2018

ABRF Proteome Informatics Research Group (iPRG) 2016 Study: Inferring Proteoforms from Bottom-up Proteomics Data

Lee, J. Y., Choi, H., Colangelo, C. M., Davis, D., Hoopmann, M. R., Käll, L., Lam, H., Payne, S. H., Perez-Riverol, Y., The, M., Wilson, R., Weintraub, S. E. & Palmblad, M., Jul 1 2018, In : Journal of biomolecular techniques : JBT. 29, 2, p. 39-45 7 p.

Research output: Contribution to journalArticle

Open Access
4 Scopus citations

Deep multi-OMICs and multi-tissue characterization in a pre-and postprandial state in human volunteers: The GEMM family study research design

Bastarrachea, R. A., Laviada-Molina, H. A., Nava-Gonzalez, E. J., Leal-Berumen, I., Escudero-Lourdes, C., Escalante-Araiza, F., Peschard, V. G., Veloz-Garza, R. A., Haack, K., Martínez-Hernández, A., Barajas-Olmos, F. M., Molina-Segui, F., Buenfil-Rello, F. A., Gonzalez-Ramirez, L., Janssen-Aguilar, R., Lopez-Muñoz, R., Perez-Cetina, F., Gaytan-Saucedo, J. F., Vaquera, Z., Cornejo-Barrera, J. & 19 others, Castillo-Pineda, J. C., Murillo-Ramirez, A., Diaz-Tena, S. P., Figueroa-Nuñez, B., González-López, L., Salinas-Osornio, R. A., Valencia-Rendón, M. E., Ángeles-Chimal, J., Tapia, J. S. O., Remes-Troche, J. M., Valdovinos-Chavez, S. B., Huerta-Avila, E. E., Han, X., Orozco, L., Rodriguez-Ayala, E., Weintraub, S., Gallegos-Cabrales, E. C., Cole, S. A. & Kent, J. W., Nov 2 2018, In : Genes. 9, 11, 532.

Research output: Contribution to journalArticle

3 Scopus citations

Functionality of Redox-Active Cysteines Is Required for Restriction of Retroviral Replication by SAMHD1

Wang, Z., Bhattacharya, A., White, T., Buffone, C., McCabe, A., Nguyen, L. A., Shepard, C. N., Pardo, S., Kim, B., Weintraub, S. T., Demeler, B., Diaz-Griffero, F. & Ivanov, D. N., Jul 24 2018, In : Cell Reports. 24, 4, p. 815-823 9 p.

Research output: Contribution to journalArticle

5 Scopus citations

Major venom proteins of the fire ant Solenopsis invicta: insights into possible pheromone-binding function from mass spectrometric analysis

Das, T., Alabi, I., Colley, M., Yan, F., Griffith, W., Bach, S., Weintraub, S. T. & Renthal, R., Aug 2018, In : Insect Molecular Biology. 27, 4, p. 505-511 7 p.

Research output: Contribution to journalArticle

3 Scopus citations
2017

ABRF Proteome Informatics Research Group (iPRG) 2015 Study: Detection of Differentially Abundant Proteins in Label-Free Quantitative LC-MS/MS Experiments

Choi, M., Eren-Dogu, Z. F., Colangelo, C., Cottrell, J., Hoopmann, M. R., Kapp, E. A., Kim, S., Lam, H., Neubert, T. A., Palmblad, M., Phinney, B. S., Weintraub, S. E., MacLean, B. & Vitek, O., Feb 3 2017, In : Journal of Proteome Research. 16, 2, p. 945-957 13 p.

Research output: Contribution to journalArticle

17 Scopus citations

A Comprehensive High-Resolution Targeted Workflow for the Deep Profiling of Sphingolipids

Peng, B., Weintraub, S. E., Coman, C., Ponnaiyan, S., Sharma, R., Tews, B., Winter, D. & Ahrends, R., Nov 21 2017, In : Analytical Chemistry. 89, 22, p. 12480-12487 8 p.

Research output: Contribution to journalArticle

12 Scopus citations

Docosahexaenoic Acid Supplementation in Pregnancy Modulates Placental Cellular Signaling and Nutrient Transport Capacity in Obese Women

Lager, S., Ramirez, V. I., Acosta, O., Meireles, C., Miller, E., Gaccioli, F., Rosario, F. J., Gelfond, J. A., Hakala, K., Weintraub, S. E., Krummel, D. A. & Powell, T. L., Dec 1 2017, In : The Journal of clinical endocrinology and metabolism. 102, 12, p. 4557-4567 11 p.

Research output: Contribution to journalArticle

9 Scopus citations

Reactive sites and course of reduction in the Rieske protein

Li, S. Y., Oyala, P. H., Britt, R. D., Weintraub, S. E. & Hunsicker-Wang, L. M., Feb 14 2017, (Accepted/In press) In : Journal of Biological Inorganic Chemistry. p. 1-13 13 p.

Research output: Contribution to journalArticle

2 Scopus citations

The naked mole-rat exhibits an unusual cardiac myofilament protein profile providing new insights into heart function of this naturally subterranean rodent

Grimes, K. M., Barefield, D. Y., Kumar, M., McNamara, J. W., Weintraub, S. E., de Tombe, P. P., Sadayappan, S. & Buffenstein, R., Aug 5 2017, (Accepted/In press) In : Pflugers Archiv European Journal of Physiology. p. 1-11 11 p.

Research output: Contribution to journalArticle

6 Scopus citations

To be or not to be T4: Evidence of a complex evolutionary pathway of head structure and assembly in giant Salmonella virus SPN3US

Ali, B., Desmond, M. I., Mallory, S. A., Benítez, A. D., Buckley, L. J., Weintraub, S. E., Osier, M. V., Black, L. W. & Thomas, J. A., Nov 15 2017, In : Frontiers in Microbiology. 8, NOV, 2251.

Research output: Contribution to journalArticle

5 Scopus citations
2016

Challenges in Large-Scale Computational Mass Spectrometry and Multiomics

Kohlbacher, O., Vitek, O. & Weintraub, S. T., Mar 4 2016, In : Journal of Proteome Research. 15, 3, p. 681-682 2 p.

Research output: Contribution to journalEditorial

Down-regulation of placental transport of amino acids precedes the development of intrauterine growth restriction in maternal nutrient restricted baboons

Pantham, P., Rosario, F. J., Weintraub, S. T., Nathanielsz, P. W., Powell, T. L., Li, C. & Jansson, T., Nov 1 2016, In : Biology of Reproduction. 95, 5, 98.

Research output: Contribution to journalArticle

17 Scopus citations

Greazy: Open-Source Software for Automated Phospholipid Tandem Mass Spectrometry Identification

Kochen, M. A., Chambers, M. C., Holman, J. D., Nesvizhskii, A. I., Weintraub, S. E., Belisle, J. T., Islam, M. N., Griss, J. & Tabb, D. L., Jun 7 2016, In : Analytical Chemistry. 88, 11, p. 5733-5741 9 p.

Research output: Contribution to journalArticle

33 Scopus citations

Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1

Deutsch, E. W., Overall, C. M., Van Eyk, J. E., Baker, M. S., Paik, Y. K., Weintraub, S. T., Lane, L., Martens, L., Vandenbrouck, Y., Kusebauch, U., Hancock, W. S., Hermjakob, H., Aebersold, R., Moritz, R. L. & Omenn, G. S., Nov 4 2016, In : Journal of Proteome Research. 15, 11, p. 3961-3970 10 p.

Research output: Contribution to journalReview article

104 Scopus citations

Identification of structural and morphogenesis genes of Pseudoalteromonas phage φRIO-1 and placement within the evolutionary history of Podoviridae

Hardies, S. C., Thomas, J. A., Black, L., Weintraub, S. E., Hwang, C. Y. & Cho, B. C., Feb 1 2016, In : Virology. 489, p. 116-127 12 p.

Research output: Contribution to journalArticle

16 Scopus citations

Matrix metalloproteinase-9-dependent mechanisms of reduced contractility and increased stiffness in the aging heart

Padmanabhan Iyer, R., Chiao, Y. A., Flynn, E. R., Hakala, K., Cates, C. A., Weintraub, S. T. & de Castro Brás, L. E., Jan 1 2016, In : Proteomics - Clinical Applications. 10, 1, p. 92-107 16 p.

Research output: Contribution to journalArticle

6 Scopus citations

Protein S-glutathionylation mediates macrophage responses to metabolic cues from the extracellular environment

Ullevig, S. L., Kim, H. S., Short, J. D., Tavakoli, S., Weintraub, S. E., Downs, K. & Asmis, R., Nov 20 2016, In : Antioxidants and Redox Signaling. 25, 15, p. 836-851 16 p.

Research output: Contribution to journalArticle

20 Scopus citations

Sexual dimorphism in activation of placental autophagy in obese women with evidence for fetal programming from a placenta-specific mouse model

Muralimanoharan, S., Gao, X., Weintraub, S. E., Myatt, L. & Maloyan, A., May 3 2016, In : Autophagy. 12, 5, p. 752-769 18 p.

Research output: Contribution to journalArticle

25 Scopus citations
2015

C-Myc and AMPK control cellular energy levels by cooperatively regulating mitochondrial structure and function

Edmunds, L. R., Sharma, L., Wang, H., Kang, A., D'Souza, S., Lu, J., McLaughlin, M., Dolezal, J. M., Gao, X., Weintraub, S. T., Ding, Y., Zeng, X., Yates, N. & Prochownik, E. V., Jul 31 2015, In : PloS one. 10, 7, e0134049.

Research output: Contribution to journalArticle

15 Scopus citations

D2HGDH regulates alpha-ketoglutarate levels and dioxygenase function by modulating IDH2

Lin, A. P., Abbas, S., Kim, S. W., Ortega, M., Bouamar, H., Escobedo, Y., Varadarajan, P., Qin, Y., Sudderth, J., Schulz, E., Deutsch, A., Mohan, S., Ulz, P., Neumeister, P., Rakheja, D., Gao, X., Hinck, A., Weintraub, S. E., DeBerardinis, R. J., Sill, H. & 2 others, Dahia, P. L. & Aguiar, R. C., Jul 16 2015, In : Nature Communications. 6, 7768.

Research output: Contribution to journalArticle

21 Scopus citations

Managing expectations when publishing tools and methods for computational proteomics

Martens, L., Kohlbacher, O. & Weintraub, S. T., May 1 2015, In : Journal of Proteome Research. 14, 5, p. 2002-2004 3 p.

Research output: Contribution to journalArticle

5 Scopus citations

Nedd8 regulates inflammasome-dependent caspase-1 activation

Segovia, J. A., Tsai, S. Y., Chang, T. H., Shil, N. K., Weintraub, S. T., Short, J. D. & Bose, S., Jan 1 2015, In : Molecular and cellular biology. 35, 3, p. 582-597 16 p.

Research output: Contribution to journalArticle

18 Scopus citations

P53 and rapamycin are additive

Christy, B., Demaria, M., Campisi, J., Huang, J., Jones, D., Dodds, S. G., Williams, C., Hubbard, G., Livi, C. B., Gao, X., Weintraub, S., Curiel, T., Sharp, Z. D. & Hasty, P., Jan 1 2015, In : Oncotarget. 6, 18, p. 15802-15813 12 p.

Research output: Contribution to journalArticle

Open Access
16 Scopus citations
2014

A cytosolic protein factor from the naked mole-rat activates proteasomes of other species and protects these from inhibition

Rodriguez, K. A., Osmulski, P. A., Pierce, A., Weintraub, S. T., Gaczynska, M. & Buffenstein, R., Nov 1 2014, In : Biochimica et Biophysica Acta - Molecular Basis of Disease. 1842, 11, p. 2060-2072 13 p.

Research output: Contribution to journalArticle

33 Scopus citations

Adiponectin inhibits insulin function in primary trophoblasts by PPARα-mediated ceramide synthesis

Aye, I. L. M. H., Gao, X., Weintraub, S. T., Jansson, T. & Powell, T. L., 2014, In : Molecular Endocrinology. 28, 4, p. 512-524 13 p.

Research output: Contribution to journalArticle

43 Scopus citations

Age and SPARC change the extracellular matrix composition of the left ventricle

De Castro Brás, L. E., Toba, H., Baicu, C. F., Zile, M. R., Weintraub, S. T., Lindsey, M. L. & Bradshaw, A. D., 2014, In : BioMed Research International. 2014, 810562.

Research output: Contribution to journalArticle

23 Scopus citations

Are presentations at ASMS conferences publications?

Muddiman, D. C. & Weintraub, S. T., Mar 1 2014, In : Journal of the American Society for Mass Spectrometry. 25, 3, p. 301-302 2 p.

Research output: Contribution to journalEditorial

Citrate synthase is a novel in vivo matrix metalloproteinase-9 substrate that regulates mitochondrial function in the postmyocardial infarction left ventricle

De Castro Brás, L. E., Cates, C. A., DeLeon-Pennell, K. Y., Ma, Y., Iyer, R. P., Halade, G. V., Yabluchanskiy, A., Fields, G. B., Weintraub, S. T. & Lindsey, M. L., Nov 10 2014, In : Antioxidants and Redox Signaling. 21, 14, p. 1974-1985 12 p.

Research output: Contribution to journalArticle

19 Scopus citations

Negative elongation factor controls energy homeostasis in cardiomyocytes

Pan, H., Qin, K., Guo, Z., Ma, Y., April, C., Gao, X., Andrews, T. G., Bokov, A., Zhang, J., Chen, Y., Weintraub, S. T., Fan, J. B., Wang, D., Hu, Y., Aune, G. J., Lindsey, M. L. & Li, R., Oct 4 2014, In : Cell Reports. 7, 1, p. 79-85 7 p.

Research output: Contribution to journalArticle

14 Scopus citations

Proteomic analysis of the EWS-Fli-1 interactome reveals the role of the lysosome in EWS-Fli-1 turnover

Elzi, D. J., Song, M., Hakala, K., Weintraub, S. T. & Shiio, Y., Aug 1 2014, In : Journal of Proteome Research. 13, 8, p. 3783-3791 9 p.

Research output: Contribution to journalArticle

13 Scopus citations

Targeted peptide measurements in biology and medicine: Best practices for mass spectrometry-based assay development using a fit-for-purpose approach

Carr, S. A., Abbatiello, S. E., Ackermann, B. L., Borchers, C., Domon, B., Deutsch, E. W., Grant, R. P., Hoofnagle, A. N., Hüttenhain, R., Koomen, J. M., Liebler, D. C., Liu, T., MacLean, B., Mani, D. R., Mansfield, E., Neubert, H., Paulovich, A. G., Reiter, L., Vitek, O., Aebersold, R. & 25 others, Anderson, L., Bethem, R., Blonder, J., Boja, E., Botelho, J., Boyne, M., Bradshaw, R. A., Burlingame, A. L., Chan, D., Keshishian, H., Kuhn, E., Kinsinger, C., Lee, J. S. H., Lee, S. W., Moritz, R., Oses-Prieto, J., Rifai, N., Ritchie, J., Rodriguez, H., Srinivas, P. R., Townsend, R. R., Van Eyk, J., Whiteley, G., Wiita, A. & Weintraub, S., Mar 2014, In : Molecular and Cellular Proteomics. 13, 3, p. 907-917 11 p.

Research output: Contribution to journalArticle

310 Scopus citations

Vaccine-mediated immune responses to experimental pulmonary cryptococcus gattii infection in mice

Chaturvedi, A. K., Hameed, R. S., Wozniak, K. L., Hole, C. R., Wager, C. M. L., Weintraub, S. T., Lopez-Ribot, J. L. & Wormley, F. L., Aug 13 2014, In : PloS one. 9, 8, e104316.

Research output: Contribution to journalArticle

24 Scopus citations
2013

Identification and characterization of Cryptococcus neoformans protein fractions that induce protective immune responses

Chaturvedi, A. K., Weintraub, S. T., Lopez-Ribot, J. L. & Wormley, F. L., Dec 1 2013, In : Proteomics. 13, 23-24, p. 3429-3441 13 p.

Research output: Contribution to journalArticle

17 Scopus citations

Interlaboratory studies and initiatives developing standards for proteomics

Ivanov, A. R., Colangelo, C. M., Dufresne, C. P., Friedman, D. B., Lilley, K. S., Mechtler, K., Phinney, B. S., Rose, K. L., Rudnick, P. A., Searle, B. C., Shaffer, S. A. & Weintraub, S. T., Mar 1 2013, In : Proteomics. 13, 6, p. 904-909 6 p.

Research output: Contribution to journalArticle

25 Scopus citations

Proteomic analysis of the left ventricle post-myocardial infarction to identify in vivo candidate matrix metalloproteinase substrates

Yabluchanskiy, A., Li, Y., De Castro Brás, L. E., Hakala, K., Weintraub, S. E. & Lindsey, M. L., 2013, Methods in Molecular Biology. Humana Press, Vol. 1066. p. 185-199 15 p. (Methods in Molecular Biology; vol. 1066).

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Scopus citations

Texas 3-Step decellularization protocol: Looking at the cardiac extracellular matrix

De Castro Brás, L. E., Ramirez, T. A., DeLeon-Pennell, K. Y., Chiao, Y. A., Ma, Y., Dai, Q., Halade, G. V., Hakala, K., Weintraub, S. T. & Lindsey, M. L., Jun 8 2013, In : Journal of Proteomics. 86, p. 43-52 10 p.

Research output: Contribution to journalArticle

46 Scopus citations
2012

Characterization of lytic Pseudomonas aeruginosa bacteriophages via biological properties and genomic sequences

Karumidze, N., Thomas, J. A., Kvatadze, N., Goderdzishvili, M., Hakala, K. W., Weintraub, S. T., Alavidze, Z. & Hardies, S. C., May 8 2012, In : Applied Microbiology and Biotechnology. 94, 6, p. 1609-1617 9 p.

Research output: Contribution to journalArticle

20 Scopus citations
7 Scopus citations

Extensive proteolysis of head and inner body proteins by a morphogenetic protease in the giant Pseudomonas aeruginosa phage φKZ

Thomas, J. A., Weintraub, S. T., Wu, W., Winkler, D. C., Cheng, N., Steven, A. C. & Black, L. W., Apr 1 2012, In : Molecular Microbiology. 84, 2, p. 324-339 16 p.

Research output: Contribution to journalArticle

26 Scopus citations

Plasminogen activator inhibitor 1 - Insulin-like growth factor binding protein 3 cascade regulates stress-induced senescence

Elzi, D. J., Lai, Y., Song, M., Hakala, K., Weintraub, S. T. & Shiio, Y., Jul 24 2012, In : Proceedings of the National Academy of Sciences of the United States of America. 109, 30, p. 12052-12057 6 p.

Research output: Contribution to journalArticle

65 Scopus citations

Profiling the Anaerobic Response of C. elegans Using GC-MS

Butler, J. A., Mishur, R. J., Bokov, A. F., Hakala, K. W., Weintraub, S. T. & Rea, S. L., Sep 27 2012, In : PloS one. 7, 9, e46140.

Research output: Contribution to journalArticle

20 Scopus citations