Find Research Outputs

2019
2 Citations (Scopus)

Global analysis of N6-methyladenosine functions and its disease association using deep learning and network-based methods

Zhang, S. Y., Zhang, S. W., Fan, X. N., Meng, J., Chen, Y., Gao, S. J. & Huang, Y., Jan 1 2019, In : PLoS Computational Biology. 15, 1, p. e1006663

Research output: Contribution to journalArticle

Global Analysis
learning
Association reactions
Learning
Genes
2 Citations (Scopus)

Global proteomic profiling of salmonella infection by a Giant phage

Weintraub, S. E., Redzuan, N. H. M., Barton, M. K., Amin, N. A. M., Desmond, M. I., Adams, L. E., Ali, B., Pardo, S., Molleur, D., Wu, W., Newcomb, W. W., Osier, M. V., Black, L. W., Steven, A. C. & Thomas, J. A., Mar 1 2019, In : Journal of Virology. 93, 5, 01833-18.

Research output: Contribution to journalArticle

Open Access
Salmonella Infections
salmonellosis
bacteriophages
Proteomics
proteomics
5 Citations (Scopus)

Global Strategy for the Diagnosis, Management, and Prevention of Chronic Obstructive Lung Disease: the GOLD science committee report 2019

Singh, D., Agusti, A., Anzueto, A. R., Barnes, P. J., Bourbeau, J., Celli, B. R., Criner, G. J., Frith, P., Halpin, D. M. G., Han, M., López Varela, M. V., Martinez, F., Montes de Oca, M., Papi, A., Pavord, I. D., Roche, N., Sin, D. D., Stockley, R., Vestbo, J., Wedzicha, J. A. & 1 others, Vogelmeier, C., May 1 2019, In : The European respiratory journal. 53, 5

Research output: Contribution to journalReview article

Open Access
Chronic Obstructive Pulmonary Disease
Pharmacology
Eosinophils
Adrenal Cortex Hormones
Therapeutics

Glucose-Lowering by Leptin in the Absence of Insulin Does Not Fully Rely on the Central Melanocortin System in Male Mice

Singha, A. K., Yamaguchi, J., Gonzalez, N. S., Ahmed, N., Toney, G. M. & Fujikawa, T., Mar 1 2019, In : Endocrinology. 160, 3, p. 651-663 13 p.

Research output: Contribution to journalArticle

Melanocortins
Leptin
Receptor, Melanocortin, Type 4
Insulin
Glucose

Glucose-Mediated Glucose Disposal at Baseline Insulin Is Impaired in IFG

Alatrach, M., Agyin, C., Mehta, R., Adams, J., Defronzo, R. A. & Abdul-ghani, M. A., Jan 1 2019, In : The Journal of clinical endocrinology and metabolism. 104, 1, p. 163-171 9 p.

Research output: Contribution to journalArticle

Fasting
Insulin
Glucose
Clamping devices
Glucose Clamp Technique

Glycine supplementation extends lifespan of male and female mice

Miller, R. A., Harrison, D. E., Astle, C. M., Bogue, M. A., Brind, J., Fernandez, E., Flurkey, K., Javors, M. A., Ladiges, W., Leeuwenburgh, C., Macchiarini, F., Nelson, J. F., Ryazanov, A. G., Snyder, J., Stearns, T. M., Vaughan, D. E. & Strong, J. R., Jun 1 2019, In : Aging Cell. 18, 3, e12953.

Research output: Contribution to journalArticle

Open Access
Glycine
Diet
Methionine
Pathology
Inulin
1 Citation (Scopus)
Transient Receptor Potential Channels
Dentate Gyrus
Muscarinic Receptors
Neurons
Cholinergic Agents
2 Citations (Scopus)

Guidelines for DNA recombination and repair studies: Cellular assays of DNA repair pathways

Klein, H. L., Bačinskaja, G., Che, J., Cheblal, A., Elango, R., Epshtein, A., Fitzgerald, D. M., Gómez-González, B., Khan, S. R., Kumar, S., Leland, B. A., Marie, L., Mei, Q., Miné-Hattab, J., Piotrowska, A., Polleys, E. J., Putnam, C. D., Radchenko, E. A., Saada, A. A., Sakofsky, C. J. & 28 others, Shim, E., Stracy, M., Xia, J., Yan, Z., Yin, Y., Aguilera, A., Argueso, J. L., Freudenreich, C. H., Gasser, S. M., Gordenin, D. A., Haber, J. E., Ira, G., Jinks-Robertson, S., King, M. C., Kolodner, R. D., Kuzminov, A., Lambert, S. A. E., Lee, S., Miller, K. M., Mirkin, S. M., Petes, T. D., Rosenberg, S. M., Rothstein, R., Symington, L. S., Zawadzki, P., Kim, N., Lisby, M. & Malkova, A., Jan 1 2019, In : Microbial Cell. 6, 1, p. 1-64 64 p.

Research output: Contribution to journalReview article

Open Access
Recombinational DNA Repair
DNA Repair
Molecular Biology
Assays
Repair
1 Citation (Scopus)

Harmonizing brain magnetic resonance imaging methods for vascular contributions to neurodegeneration

Smith, E. E., Biessels, G. J., De Guio, F., de Leeuw, F. E., Duchesne, S., Düring, M., Frayne, R., Ikram, M. A., Jouvent, E., MacIntosh, B. J., Thrippleton, M. J., Vernooij, M. W., Adams, H., Backes, W. H., Ballerini, L., Black, S. E., Chen, C., Corriveau, R., DeCarli, C., Greenberg, S. M. & 29 others, Gurol, M. E., Ingrisch, M., Job, D., Lam, B. Y. K., Launer, L. J., Linn, J., McCreary, C. R., Mok, V. C. T., Pantoni, L., Pike, G. B., Ramirez, J., Reijmer, Y. D., Romero, J. R., Ropele, S., Rost, N. S., Sachdev, P. S., Scott, C. J. M., Seshadri, S., Sharma, M., Sourbron, S., Steketee, R. M. E., Swartz, R. H., van Oostenbrugge, R., van Osch, M., van Rooden, S., Viswanathan, A., Werring, D., Dichgans, M. & Wardlaw, J. M., Dec 1 2019, In : Alzheimer's and Dementia: Diagnosis, Assessment and Disease Monitoring. 11, p. 191-204 14 p.

Research output: Contribution to journalShort survey

Open Access
Blood Vessels
Cerebral Small Vessel Diseases
Magnetic Resonance Imaging
Neuroimaging
Brain
1 Citation (Scopus)

Hemodialysis access creation episode-based cost measure

Shireman, P. K., Woo, K. & Lipsitz, E. C., Apr 1 2019, In : Journal of Vascular Surgery. 69, 4, 1 p.

Research output: Contribution to journalArticle

Renal Dialysis
Costs and Cost Analysis

Hepatic posttranscriptional network comprised of CCR4–NOT deadenylase and FGF21 maintains systemic metabolic homeostasis

Morita, M., Siddiqui, N., Katsumura, S., Rouya, C., Larsson, O., Nagashima, T., Hekmatnejad, B., Takahashi, A., Kiyonari, H., Zang, M., St-Arnaud, R., Oike, Y., Giguère, V., Topisirovic, I., Okada-Hatakeyama, M., Yamamoto, T. & Sonenberg, N., Apr 16 2019, In : Proceedings of the National Academy of Sciences of the United States of America. 116, 16, p. 7973-7981 9 p.

Research output: Contribution to journalArticle

Homeostasis
Liver
Tristetraprolin
Hormones
Adipokines
Open Access
Mesenchymal Stromal Cells
Hepatocytes
Liver
Cultured Cells
Collagen Type I
5 Citations (Scopus)

Hepatocyte-Macrophage Acetoacetate Shuttle Protects against Tissue Fibrosis

Puchalska, P., Martin, S. E., Huang, X., Lengfeld, J. E., Daniel, B., Graham, M. J., Han, X., Nagy, L., Patti, G. J. & Crawford, P. A., Feb 5 2019, In : Cell Metabolism. 29, 2, p. 383-398.e7

Research output: Contribution to journalArticle

Hepatocytes
Fibrosis
Macrophages
Coenzyme A-Transferases
Keto Acids
1 Citation (Scopus)

Heterogeneous Expression of SDF1 Retains Actively Proliferating Neural Progenitors in the Capillary Compartment of the Niche

Zhu, C., Mahesula, S., Temple, S. & Cearley, E. K., Jan 8 2019, In : Stem Cell Reports. 12, 1, p. 6-13 8 p.

Research output: Contribution to journalArticle

Blood vessels
Stem cells
Chemokines
Blood Vessels
Neural Stem Cells

Heterozygous Tsc2 (Tsc2+/-) mouse model to study induced renal cancer in response to ionizing radiation at low doses

M A, S., Delma, C. R., Manickam, K., Mohan, S., Habib, S. L. & Natarajan, M., Jul 6 2019, In : Carcinogenesis. 40, 6, p. 782-790 9 p.

Research output: Contribution to journalArticle

Kidney Neoplasms
Ionizing Radiation
Kidney
Reactive Oxygen Species
Radioactive Hazard Release
Branched Chain Amino Acids
Papio
Premature Infants
Amino Acids
Ornithine

High-energy tibial pilon fractures: an instructional review

Zelle, B. A., Dang, K. H. & Ornell, S. S., Jan 1 2019, In : International Orthopaedics.

Research output: Contribution to journalReview article

Tibial Fractures
Wounds and Injuries
Fracture Fixation
Orthopedics
Orthopedic Procedures

High glucose increases miR-214 to power a feedback loop involving PTEN and the Akt/mTORC1 signaling axis

Maity, S., Das, F., Ghosh-choudhury, N., Kasinath, B. S. & Ghosh-choudhury, G., Jan 1 2019, In : FEBS Letters.

Research output: Contribution to journalLetter

Feedback
Glucose
Sirolimus
Phosphatidylinositol 3-Kinases
Diabetic Nephropathies

High mobility group box 1 and markers of oxidative stress in human cord blood

D'Angelo, G., Granese, R., Marseglia, L., Impellizzeri, P., Alibrandi, A., Palmara, A., La Rosa, M. A., Manti, S., Salpietro, C., Spina, E., Reiter, R. J., Falsaperla, R., Corsello, G. & Gitto, E., Mar 1 2019, In : Pediatrics International. 61, 3, p. 264-270 7 p.

Research output: Contribution to journalArticle

Fetal Blood
Oxidative Stress
Parturition
Cesarean Section
Emergencies
1 Citation (Scopus)

High-Phosphate Diet Induces Exercise Intolerance and Impairs Fatty Acid Metabolism in Mice

Peri-Okonny, P., Baskin, K. K., Iwamoto, G., Mitchell, J. H., Smith, S. A., Kim, H. K., Szweda, L. I., Bassel-Duby, R., Fujikawa, T., Castorena, C. M., Richardson, J., Shelton, J. M., Ayers, C., Berry, J. D., Malladi, V. S., Hu, M. C., Moe, O. W., Scherer, P. E. & Vongpatanasin, W., Mar 12 2019, In : Circulation. 139, 11, p. 1422-1434 13 p.

Research output: Contribution to journalArticle

Fatty Acids
Phosphates
Diet
Skeletal Muscle Fibers
Serum
Mammography
Hispanic Americans
Breast
cancer
Breast Neoplasms
Open Access
Sodium-Glucose Transport Proteins
Glycosuria
Symporters
Type 2 Diabetes Mellitus
Hemodynamics

House dust mite exposure attenuates influenza A infection in a mouse model of pulmonary allergic inflammation

Hu, Q., Gilley, R. P. & Dube, P. H., Apr 1 2019, In : Microbial Pathogenesis. 129, p. 242-249 8 p.

Research output: Contribution to journalArticle

Pyroglyphidae
Allergens
Human Influenza
Pneumonia
Asthma

Human Cortical Thickness Organized into Genetically-determined Communities across Spatial Resolutions

Alexander-Bloch, A. F., Mathias, S. R., Fox, P. T., Olvera, R. L., Göring, H. H. H., Duggirala, R., Curran, J. E., Blangero, J. & Glahn, D. C., Jan 1 2019, In : Cerebral cortex (New York, N.Y. : 1991). 29, 1, p. 106-118 13 p.

Research output: Contribution to journalArticle

Brain
Cerebrum
Genetic Association Studies
Pedigree
Cerebral Cortex

Hyperadrenocorticism of calorie restriction contributes to its anti-inflammatory action in mice

Allen, B. D., Liao, C. Y., Shu, J., Muglia, L. J., Majzoub, J. A., Diaz, V. & Nelson, J. F., Jun 1 2019, In : Aging Cell. 18, 3, e12944.

Research output: Contribution to journalArticle

Open Access
Adrenocortical Hyperfunction
Corticosterone
Corticotropin-Releasing Hormone
Anti-Inflammatory Agents
Knockout Mice

Iatrogenic Propylene Glycol Intoxication Due to High-Dose Pentobarbital for Refractory Intracranial Hypertension: A Case Report

Smedley, L. W., Rios, D., Barthol, C. A. & Garvin, R. E., Jan 1 2019, In : Journal of Pharmacy Practice.

Research output: Contribution to journalArticle

Propylene Glycol
Intracranial Hypertension
Pentobarbital
Acute Kidney Injury
Lactic Acidosis
1 Citation (Scopus)

Identification of C-6 as a New Site for Linker Conjugation to the Taccalonolide Microtubule Stabilizers

Du, L., Risinger, A. L., Yee, S. S., Ola, A. R. B., Zammiello, C. L., Cichewicz, R. H. & Mooberry, S. L., Mar 22 2019, In : Journal of Natural Products. 82, 3, p. 583-588 6 p.

Research output: Contribution to journalArticle

Tubulin
Microtubules
Assays
Epoxy Compounds
Fluorescein

Identification of CP77 as the third orthopoxvirus SAMD9 and SAMD9L inhibitor with unique specificity for a rodent SAMD9L

Zhang, F., Meng, X., Townsend, M. B., Satheshkumar, P. S. & Xiang, Y., Jan 1 2019, In : Journal of Virology. 93, 12, e0022519.

Research output: Contribution to journalArticle

Orthopoxvirus
Chinese hamsters
Cricetulus
Rodentia
rodents

Identification of oxidative stress–related Xdh gene as a di(2-ethylhexyl)phthalate (DEHP) target and the use of melatonin to alleviate the DEHP-induced impairments in newborn mouse ovaries

Liu, J. C., Li, L., Yan, H. C., Zhang, T., Zhang, P., Sun, Z. Y., De Felici, M., Reiter, R. J. & Shen, W., Jan 1 2019, In : Journal of pineal research. e12577.

Research output: Contribution to journalArticle

Open Access
Xanthine Dehydrogenase
Melatonin
Ovary
Genes
Reactive Oxygen Species

Identifying generalized anxiety disorder using resting state habenular circuitry

Ma, Z., Zhong, Y., Hines, C. S., Wu, Y., Li, Y., Pang, M., Li, J., Wang, C., Fox, P. T., Zhang, N. & Wang, C., Jan 1 2019, In : Brain Imaging and Behavior.

Research output: Contribution to journalArticle

Habenula
Anxiety Disorders
Prefrontal Cortex
ROC Curve
Pulvinar

If You Build It, Will They Come? Candidate Completion of Preinterview Screening Assessments

Gardner, A. K., Cavanaugh, K. J., Willis, R. & Dunkin, B. J., Jan 1 2019, In : Journal of Surgical Education.

Research output: Contribution to journalArticle

Licensure
Internship and Residency
applicant
candidacy
Fear

IL-10通过抑制IFN-γ和IL-2表达促进鼠衣原体感染

Translated title of the contribution: IL-10 promotes Chlamydia muridarum infection in mice through inhibiting IFN-γ and IL-2 expressionHe, Q., He, M., Wang, X., Luo, X., Wu, Y. & Zhong, G., Feb 28 2019, In : Chinese Journal of Microbiology and Immunology (China). 39, 2, p. 126-130 5 p.

Research output: Contribution to journalArticle

Chlamydia muridarum
Chlamydia Infections
Interleukin-10
Interleukin-2
Gene Knockout Techniques

Imaging of non-traumatic urinary bladder emergencies

Nepal, P., Ojili, V., Sapire, J. M., Katkar, A., Baxi, A. & Nagar, A., Jan 1 2019, In : Emergency Radiology.

Research output: Contribution to journalArticle

Urinary Bladder
Emergencies
Multidetector Computed Tomography
Pathology

Immunodeficiency potentiates the ability of decellularized muscle matrix to regenerate a volumetric muscle injury

Olson, L. C., Cohen, D. J., Boyan, B. D., Schwartz, Z. & McClure, M. J., Jan 1 2019, Society for Biomaterials Annual Meeting and Exposition 2019: The Pinnacle of Biomaterials Innovation and Excellence - Transactions of the 42nd Annual Meeting. Society for Biomaterials, 1 p. (Transactions of the Annual Meeting of the Society for Biomaterials and the Annual International Biomaterials Symposium; vol. 40).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Muscle
Muscles
Wounds and Injuries
Animals
Regeneration

Impact of Cirrhosis on Pneumonia-Related Outcomes in Hospitalized Older Veterans

Boivin, Z., Perez, M. F., Atuegwu, N. C., Anzueto, A. R. & Mortensen, E. M., Apr 1 2019, In : American Journal of the Medical Sciences. 357, 4, p. 296-301 6 p.

Research output: Contribution to journalArticle

Veterans
Pneumonia
Fibrosis
Mortality
Intensive Care Units
Open Access
Solid-State Lasers
Wound Healing
Therapeutics
Ultrasonics
Periodontium

Impact of High-Molecular-Risk Mutations on Transplantation Outcomes in Patients with Myelofibrosis

Tamari, R., Rapaport, F., Zhang, N., McNamara, C., Kuykendall, A., Sallman, D. A., Komrokji, R., Arruda, A., Najfeld, V., Sandy, L., Medina, J., Litvin, R., Famulare, C. A., Patel, M. A., Maloy, M., Castro-Malaspina, H., Giralt, S. A., Weinberg, R. S., Mascarenhas, J. O., Mesa, R. & 6 others, Rondelli, D., Dueck, A. C., Levine, R. L., Gupta, V., Hoffman, R. & Rampal, R. K., Jun 1 2019, In : Biology of Blood and Marrow Transplantation. 25, 6, p. 1142-1151 10 p.

Research output: Contribution to journalArticle

Primary Myelofibrosis
Transplantation
Mutation
Hematopoietic Stem Cell Transplantation
Survival

Impaired non-homologous end joining in human primary alveolar type II cells in emphysema

Kosmider, B., Lin, C. R., Vlasenko, L., Marchetti, N., Bolla, S., Criner, G. J., Messier, E., Reisdorph, N., Powell, R. L., Muniswamy, M., Kelsen, S., Xander, N., Correll, K. A., Mason, R. J. & Bahmed, K., Dec 1 2019, In : Scientific Reports. 9, 1, 920.

Research output: Contribution to journalArticle

Alveolar Epithelial Cells
Emphysema
DNA Damage
Smoke
Tobacco Products

Implementing alcohol use disorder pharmacotherapy in primary care settings: a qualitative analysis of provider-identified barriers and impact on implementation outcomes

Hagedorn, H. J., Wisdom, J. P., Gerould, H., Pinsker, E., Brown, R., Dawes, M. A., Dieperink, E., Myrick, D. H., Oliva, E. M., Wagner, T. H. & Harris, A. H. S., Jul 10 2019, In : Addiction science & clinical practice. 14, 1, 1 p.

Research output: Contribution to journalArticle

Open Access
Primary Health Care
Alcohols
Drug Therapy
Research
Interviews

Improving quality of life among latino cancer survivors: Design of a randomized trial of patient navigation

Ramirez, A. G., Gallion, K. J., Perez, A., Munoz, E., Longparma, D., Moreno, P. I. & Penedo, F. J., Jan 1 2019, In : Contemporary Clinical Trials. 76, p. 41-48 8 p.

Research output: Contribution to journalArticle

Patient Navigation
Hispanic Americans
Survivors
Quality of Life
Neoplasms

Incidental Microscopic Granulosa Cell Proliferations: Tumorlet or Non-neoplastic?

Menon, P. D., Valente, P. T. & Nazarullah, A., Jan 1 2019, (Accepted/In press) In : International Journal of Gynecological Pathology.

Research output: Contribution to journalArticle

Granulosa Cells
Cell Proliferation
Granulosa Cell Tumor
Endometriosis
Cysts

Incomplete superficial palmar arch and bilateral persistent median artery

Buch, C., Devora, C. M., Johnson, L. Y., Rahimi, O. B. & Kar, R., Jan 1 2019, In : International Journal of Surgery Case Reports. 58, p. 205-207 3 p.

Research output: Contribution to journalArticle

Open Access
Arteries
Radial Artery
Ulnar Artery
Fingers
Thumb

Increased expression of TRIP13 drives the tumorigenesis of bladder cancer in association with the EGFR signaling pathway

Gao, Y., Liu, S., Guo, Q., Zhang, S., Zhao, Y., Wang, H., Li, T., Gong, Y., Wang, Y., Zhang, T., Dong, Z., Bacich, D., Chowdhury, W. H., Rodriguez, R. & Wang, Z., Jan 1 2019, In : International Journal of Biological Sciences. 15, 7, p. 1488-1499 12 p.

Research output: Contribution to journalArticle

Open Access
Epidermal Growth Factor Receptor
Urinary Bladder Neoplasms
carcinogenesis
cancer
Carcinogenesis

Infected (“Mycotic”) coronary artery aneurysm: Systematic review

Restrepo, C. S., Gonzalez, T. V., Baxi, A. & Rojas, C. A., Jan 1 2019, (Accepted/In press) In : Journal of Cardiovascular Computed Tomography.

Research output: Contribution to journalArticle

Coronary Aneurysm
Infected Aneurysm
Coronary Vessels
Infection
Pericardium

Inhibition of demineralization at restoration margins of Z100 and tetric evoceram bulk fill in dentin and enamel

Leon-Pineda, C. & Donly, K. J., Jun 1 2019, In : Bioengineering. 6, 2, 36.

Research output: Contribution to journalArticle

Open Access
Enamels
Restoration
Fluorides
Resins
Varnish

Initial Evaluation of Computer-Assisted Radiologic Assessment for Renal Mass Edge Detection as an Indication of Tumor Roughness to Predict Renal Cancer Subtypes

Rajendran, R., Iffrig, K., Pruthi, D. K., Wheeler, A., Neuman, B., Kaushik, D., Mansour, A. M., Panetta, K., Agaian, S. & Liss, M. A., Jan 1 2019, In : Advances in Urology. 2019, 3590623.

Research output: Contribution to journalArticle

Open Access
Kidney Neoplasms
Renal Cell Carcinoma
Kidney
Neoplasms
Nephrectomy

In Reply

Liu, J., Murray, A. M., Mankus, E. B., Ireland, K. E., Acosta, O. & Ramsey, P. S., Feb 1 2019, In : Obstetrics and Gynecology. 133, 2, 1 p.

Research output: Contribution to journalArticle

Insights into the August 2019 Issue of the Journal of Endodontics

Azarpazhooh, A., Diogenes, A. R., Fouad, A. F., Glickman, G. N., Kang, M. K., Kishen, A., Levin, L., Roda, R. S., Sedgley, C. M., Tay, F. R. & Hargreaves, K. M., Jan 1 2019, In : Journal of endodontics.

Research output: Contribution to journalEditorial

Insights into the July 2019 Issue of the Journal of Endodontics

Azarpazhooh, A., Kishen, A., Tay, F. R., Diogenes, A. R., Hargreaves, K. M., Fouad, A. F., Glickman, G. N., Kang, M. K., Levin, L., Roda, R. S. & Sedgley, C. M., Jul 1 2019, In : Journal of endodontics. 45, 7, p. 829-830 2 p.

Research output: Contribution to journalEditorial

Endodontics

In situ ring contraction and transformation of the rhizoxin macrocycle through an abiotic pathway

Carter, A. C., Petersen, C. L., Wendt, K. L., Helff, S. K., Risinger, A. L., Mooberry, S. L. & Cichewicz, R. H., Jan 1 2019, In : Journal of Natural Products.

Research output: Contribution to journalArticle

Rhizopus
Ewing's Sarcoma
Nuclear magnetic resonance
Burkholderia
Antimitotic Agents