Yogesh K Gupta

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1 Similar Profiles

37 Article
2 Comment/debate
1 Review article

Fine-tuning of gene expression through the Mettl3-Mettl14-Dnmt1 axis controls ESC differentiation
Quarto, G., Li Greci, A., Bizet, M., Penning, A., Primac, I., Murisier, F., Garcia-Martinez, L., Borges, R. L., Gao, Q., Cingaram, P. K. R., Calonne, E., Hassabi, B., Hubert, C., Herpoel, A., Putmans, P., Mies, F., Martin, J., Van der Linden, L., Dube, G. & Kumar, P. & 21 others, Soin, R., Kumar, A., Misra, A., Lan, J., Paque, M., Gupta, Y. K., Blomme, A., Close, P., Estève, P. O., Caine, E. A., Riching, K. M., Gueydan, C., Daniels, D. L., Pradhan, S., Shiekhattar, R., David, Y., Morey, L., Jeschke, J., Deplus, R., Collignon, E. & Fuks, F., Feb 20 2025, In: Cell. 188, 4, p. 998-1018.e26
Research output: Contribution to journal › Article › peer-review

Open Access
21 Link opens in a new tab Scopus citations
Structural insights into the assembly and regulation of 2′-O RNA methylation by SARS-CoV-2 nsp16/nsp10
Misra, A., Rahisuddin, R., Parihar, M., Arya, S., Viswanathan, T., Jackson, N., Qi, S., Chan, S. H., Harris, R. S., Martinez-Sobrido, L. & Gupta, Y. K., Jun 5 2025, In: Structure. 33, 6, p. 1027-1039.e4
Research output: Contribution to journal › Article › peer-review

Open Access
AI is a viable alternative to high throughput screening: a 318-target study
Wallach, I., Bernard, D., Nguyen, K., Ho, G., Morrison, A., Stecula, A., Rosnik, A., O’Sullivan, A. M., Davtyan, A., Samudio, B., Thomas, B., Worley, B., Butler, B., Laggner, C., Thayer, D., Moharreri, E., Friedland, G., Truong, H., van den Bedem, H. & Ng, H. L. & 667 others, Stafford, K., Sarangapani, K., Giesler, K., Ngo, L., Mysinger, M., Ahmed, M., Anthis, N. J., Henriksen, N., Gniewek, P., Eckert, S., de Oliveira, S., Suterwala, S., PrasadPrasad, S. V. K., Shek, S., Contreras, S., Hare, S., Palazzo, T., O’Brien, T. E., Van Grack, T., Williams, T., Chern, T. R., Kenyon, V., Lee, A. H., Cann, A. B., Bergman, B., Anderson, B. M., Cox, B. D., Warrington, J. M., Sorenson, J. M., Goldenberg, J. M., Young, M. A., DeHaan, N., Pemberton, R. P., Schroedl, S., Abramyan, T. M., Gupta, T., Mysore, V., Presser, A. G., Ferrando, A. A., Andricopulo, A. D., Ghosh, A., Ayachi, A. G., Mushtaq, A., Shaqra, A. M., Toh, A. K. L., Smrcka, A. V., Ciccia, A., de Oliveira, A. S., Sverzhinsky, A., de Sousa, A. M., Agoulnik, A. I., Kushnir, A., Freiberg, A. N., Statsyuk, A. V., Gingras, A. R., Degterev, A., Tomilov, A., Vrielink, A., Garaeva, A. A., Bryant-Friedrich, A., Caflisch, A., Patel, A. K., Rangarajan, A. V., Matheeussen, A., Battistoni, A., Caporali, A., Chini, A., Ilari, A., Mattevi, A., Foote, A. T., Trabocchi, A., Stahl, A., Herr, A. B., Berti, A., Freywald, A., Reidenbach, A. G., Lam, A., Cuddihy, A. R., White, A., Taglialatela, A., Ojha, A. K., Cathcart, A. M., Motyl, A. A. L., Borowska, A., D’Antuono, A., Hirsch, A. K. H., Porcelli, A. M., Minakova, A., Montanaro, A., Müller, A., Fiorillo, A., Virtanen, A., O’Donoghue, A. J., Del Rio Flores, A., Garmendia, A. E., Pineda-Lucena, A., Panganiban, A. T., Samantha, A., Chatterjee, A. K., Haas, A. L., Paparella, A. S., John, A. L. S., Prince, A., ElSheikh, A., Apfel, A. M., Colomba, A., O’Dea, A., Diallo, B. N., Ribeiro, B. M. R. M., Bailey-Elkin, B. A., Edelman, B. L., Liou, B., Perry, B., Chua, B. S. K., Kováts, B., Englinger, B., Balakrishnan, B., Gong, B., Agianian, B., Pressly, B., Salas, B. P. M., Duggan, B. M., Geisbrecht, B. V., Dymock, B. W., Morten, B. C., Hammock, B. D., Mota, B. E. F., Dickinson, B. C., Fraser, C., Lempicki, C., Novina, C. D., Torner, C., Ballatore, C., Bon, C., Chapman, C. J., Partch, C. L., Chaton, C. T., Huang, C., Yang, C. Y., Kahler, C. M., Karan, C., Keller, C., Dieck, C. L., Huimei, C., Liu, C., Peltier, C., Mantri, C. K., Kemet, C. M., Müller, C. E., Weber, C., Zeina, C. M., Muli, C. S., Morisseau, C., Alkan, C., Reglero, C., Loy, C. A., Wilson, C. M., Myhr, C., Arrigoni, C., Paulino, C., Santiago, C., Luo, D., Tumes, D. J., Keedy, D. A., Lawrence, D. A., Chen, D., Manor, D., Trader, D. J., Hildeman, D. A., Drewry, D. H., Dowling, D. J., Hosfield, D. J., Smith, D. M., Moreira, D., Siderovski, D. P., Shum, D., Krist, D. T., Riches, D. W. H., Ferraris, D. M., Anderson, D. H., Coombe, D. R., Welsbie, D. S., Hu, D., Ortiz, D., Alramadhani, D., Zhang, D., Chaudhuri, D., Slotboom, D. J., Ronning, D. R., Lee, D., Dirksen, D., Shoue, D. A., Zochodne, D. W., Krishnamurthy, D., Duncan, D., Glubb, D. M., Gelardi, E. L. M., Hsiao, E. C., Lynn, E. G., Silva, E. B., Aguilera, E., Lenci, E., Abraham, E. T., Lama, E., Mameli, E., Leung, E., Christensen, E. M., Mason, E. R., Petretto, E., Trakhtenberg, E. F., Rubin, E. J., Strauss, E., Thompson, E. W., Cione, E., Lisabeth, E. M., Fan, E., Kroon, E. G., Jo, E., García-Cuesta, E. M., Glukhov, E., Gavathiotis, E., Yu, F., Xiang, F., Leng, F., Wang, F., Ingoglia, F., van den Akker, F., Borriello, F., Vizeacoumar, F. J., Luh, F., Buckner, F. S., Vizeacoumar, F. S., Bdira, F. B., Svensson, F., Rodriguez, G. M., Bognár, G., Lembo, G., Zhang, G., Dempsey, G., Eitzen, G., Mayer, G., Greene, G. L., Garcia, G. A., Lukacs, G. L., Prikler, G., Parico, G. C. G., Colotti, G., De Keulenaer, G., Cortopassi, G., Roti, G., Girolimetti, G., Fiermonte, G., Gasparre, G., Leuzzi, G., Dahal, G., Michlewski, G., Conn, G. L., Stuchbury, G. D., Bowman, G. R., Popowicz, G. M., Veit, G., de Souza, G. E., Akk, G., Caljon, G., Alvarez, G., Rucinski, G., Lee, G., Cildir, G., Li, H., Breton, H. E., Jafar-Nejad, H., Zhou, H., Moore, H. P., Tilford, H., Yuan, H., Shim, H., Wulff, H., Hoppe, H., Chaytow, H., Tam, H. K., Van Remmen, H., Xu, H., Debonsi, H. M., Lieberman, H. B., Jung, H., Fan, H. Y., Feng, H., Zhou, H., Kim, H. J., Greig, I. R., Caliandro, I., Corvo, I., Arozarena, I., Mungrue, I. N., Verhamme, I. M., Qureshi, I. A., Lotsaris, I., Cakir, I., Perry, J. J. P., Kwiatkowski, J., Boorman, J., Ferreira, J., Fries, J., Kratz, J. M., Miner, J., Siqueira-Neto, J. L., Granneman, J. G., Ng, J., Shorter, J., Voss, J. H., Gebauer, J. M., Chuah, J., Mousa, J. J., Maynes, J. T., Evans, J. D., Dickhout, J., MacKeigan, J. P., Jossart, J. N., Zhou, J., Lin, J., Xu, J., Wang, J., Zhu, J., Liao, J., Xu, J., Zhao, J., Lin, J., Lee, J., Reis, J., Stetefeld, J., Bruning, J. B., Bruning, J. B., Coles, J. G., Tanner, J. J., Pascal, J. M., So, J., Pederick, J. L., Costoya, J. A., Rayman, J. B., Maciag, J. J., Nasburg, J. A., Gruber, J. J., Finkelstein, J. M., Watkins, J., Rodríguez-Frade, J. M., Arias, J. A. S., Lasarte, J. J., Oyarzabal, J., Milosavljevic, J., Cools, J., Lescar, J., Bogomolovas, J., Wang, J., Kee, J. M., Liao, J., Sistla, J. C., Abrahão, J. S., Sishtla, K., Francisco, K. R., Hansen, K. B., Molyneaux, K. A., Cunningham, K. A., Martin, K. R., Gadar, K., Ojo, K. K., Wong, K. S., Wentworth, K. L., Lai, K., Lobb, K. A., Hopkins, K. M., Parang, K., Machaca, K., Pham, K., Ghilarducci, K., Sugamori, K. S., McManus, K. J., Musta, K., Faller, K. M. E., Nagamori, K., Mostert, K. J., Korotkov, K. V., Liu, K., Smith, K. S., Sarosiek, K., Rohde, K. H., Kim, K. K., Lee, K. H., Pusztai, L., Lehtiö, L., Haupt, L. M., Cowen, L. E., Byrne, L. J., Su, L., Wert-Lamas, L., Puchades-Carrasco, L., Chen, L., Malkas, L. H., Zhuo, L., Hedstrom, L., Hedstrom, L., Walensky, L. D., Antonelli, L., Iommarini, L., Whitesell, L., Randall, L. M., Fathallah, M. D., Nagai, M. H., Kilkenny, M. L., Ben-Johny, M., Lussier, M. P., Windisch, M. P., Lolicato, M., Lolli, M. L., Vleminckx, M., Caroleo, M. C., Macias, M. J., Valli, M., Barghash, M. M., Mellado, M., Tye, M. A., Wilson, M. A., Hannink, M., Ashton, M. R., Cerna, M. V. C. D., Giorgis, M., Safo, M. K., Maurice, M. S., McDowell, M. A., Pasquali, M., Mehedi, M., Serafim, M. S. M., Soellner, M. B., Alteen, M. G., Champion, M. M., Skorodinsky, M., O’Mara, M. L., Bedi, M., Rizzi, M., Levin, M., Mowat, M., Jackson, M. R., Paige, M., Al-Yozbaki, M., Giardini, M. A., Maksimainen, M. M., De Luise, M., Hussain, M. S., Christodoulides, M., Stec, N., Zelinskaya, N., Van Pelt, N., Merrill, N. M., Singh, N., Kootstra, N. A., Singh, N., Gandhi, N. S., Chan, N. L., Trinh, N. M., Schneider, N. O., Matovic, N., Horstmann, N., Longo, N., Bharambe, N., Rouzbeh, N., Mahmoodi, N., Gumede, N. J., Anastasio, N. C., Khalaf, N. B., Rabal, O., Kandror, O., Escaffre, O., Silvennoinen, O., Bishop, O. T., Iglesias, P., Sobrado, P., Chuong, P., O’Connell, P., Martin-Malpartida, P., Mellor, P., Fish, P. V., Moreira, P. O. L., Zhou, P., Liu, P., Liu, P., Wu, P., Agogo-Mawuli, P., Jones, P. L., Ngoi, P., Toogood, P., Ip, P., von Hundelshausen, P., Lee, P. H., Rowswell-Turner, R. B., Balaña-Fouce, R., Rocha, R. E. O., Guido, R. V. C., Ferreira, R. S., Agrawal, R. K., Harijan, R. K., Ramachandran, R., Verma, R., Singh, R. K., Tiwari, R. K., Mazitschek, R., Koppisetti, R. K., Dame, R. T., Douville, R. N., Austin, R. C., Taylor, R. E., Moore, R. G., Ebright, R. H., Angell, R. M., Yan, R., Kejriwal, R., Batey, R. A., Blelloch, R., Vandenberg, R. J., Hickey, R. J., Kelm, R. J., Lake, R. J., Bradley, R. K., Blumenthal, R. M., Solano, R., Gierse, R. M., Viola, R. E., McCarthy, R. R., Reguera, R. M., Uribe, R. V., do Monte-Neto, R. L., Gorgoglione, R., Cullinane, R. T., Katyal, S., Hossain, S., Phadke, S., Shelburne, S. A., Geden, S. E., Johannsen, S., Wazir, S., Legare, S., Landfear, S. M., Radhakrishnan, S. K., Ammendola, S., Dzhumaev, S., Seo, S. Y., Li, S., Zhou, S., Chu, S., Chauhan, S., Maruta, S., Ashkar, S. R., Shyng, S. L., Conticello, S. G., Buroni, S., Garavaglia, S., White, S. J., Zhu, S., Tsimbalyuk, S., Chadni, S. H., Byun, S. Y., Park, S., Xu, S. Q., Banerjee, S., Zahler, S., Espinoza, S., Gustincich, S., Sainas, S., Celano, S. L., Capuzzi, S. J., Waggoner, S. N., Poirier, S., Olson, S. H., Marx, S. O., Van Doren, S. R., Sarilla, S., Brady-Kalnay, S. M., Dallman, S., Azeem, S. M., Teramoto, T., Mehlman, T., Swart, T., Abaffy, T., Akopian, T., Haikarainen, T., Moreda, T. L., Ikegami, T., Teixeira, T. R., Jayasinghe, T. D., Gillingwater, T. H., Kampourakis, T., Richardson, T. I., Herdendorf, T. J., Kotzé, T. J., O’Meara, T. R., Corson, T. W., Hermle, T., Ogunwa, T. H., Lan, T., Su, T., Banjo, T., O’Mara, T. A., Chou, T., Chou, T. F., Baumann, U., Desai, U. R., Pai, V. P., Thai, V. C., Tandon, V., Banerji, V., Robinson, V. L., Gunasekharan, V., Namasivayam, V., Segers, V. F. M., Maranda, V., Dolce, V., Maltarollo, V. G., Scoffone, V. C., Woods, V. A., Ronchi, V. P., Van Hung Le, V., Clayton, W. B., Lowther, W. T., Houry, W. A., Li, W., Tang, W., Zhang, W., Van Voorhis, W. C., Donaldson, W. A., Hahn, W. C., Kerr, W. G., Gerwick, W. H., Bradshaw, W. J., Foong, W. E., Blanchet, X., Wu, X., Lu, X., Qi, X., Xu, X., Yu, X., Qin, X., Wang, X., Yuan, X., Zhang, X., Zhang, Y. J., Hu, Y., Aldhamen, Y. A., Chen, Y., Li, Y., Sun, Y., Zhu, Y., Gupta, Y. K., Pérez-Pertejo, Y., Li, Y., Tang, Y., He, Y., Tse-Dinh, Y. C., Sidorova, Y. A., Yen, Y., Li, Y., Frangos, Z. J., Chung, Z., Su, Z., Wang, Z., Zhang, Z., Liu, Z., Inde, Z., Artía, Z. & Heifets, A., Dec 2024, In: Scientific reports. 14, 1, 7526.
Research output: Contribution to journal › Article › peer-review

Open Access
73 Link opens in a new tab Scopus citations
Correction to: AI is a viable alternative to high throughput screening: a 318-target study (Scientific Reports, (2024), 14, 1, (7526), 10.1038/s41598-024-54655-z)
The Atomwise AIMS Program, Dec 2024, In: Scientific reports. 14, 1, 21579.
Research output: Contribution to journal › Comment/debate › peer-review

Open Access
Erratum: Correction for Chiem et al., "Identification of In Vitro Inhibitors of Monkeypox Replication" (Microbiology spectrum (2023) 11 4 (e0474522))
Chiem, K., Nogales, A., Lorenzo, M., Morales Vasquez, D., Xiang, Y., Gupta, Y. K., Blasco, R., de la Torre, J. C. & Martinez-Sobrido, L., Jan 11 2024, In: Microbiology Spectrum. 12, 1, p. e0362123
Research output: Contribution to journal › Comment/debate › peer-review

Open Access

Additional file 15 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation
Kosti, A. (Creator), De Araujo, P. R. (Contributor), Li, W.-Q. (Creator), Guardia, G. D. A. (Creator), Chiou, J. (Creator), Yi, C. (Creator), Ray, D. (Creator), Meliso, F. (Creator), Li, Y.-M. (Creator), Delambre, T. (Creator), Qiao, M. (Creator), Burns, S. S. (Creator), Lorbeer, F. K. (Creator), Georgi, F. (Creator), Flosbach, M. (Creator), Klinnert, S. (Creator), Jenseit, A. (Creator), Lei, X. (Creator), Sandoval, C. R. (Creator), Ha, K. (Creator), Zheng, H. (Creator), Pandey, R. (Creator), Gruslova, A. (Creator), Gupta, Y. K. (Creator), Brenner, A. (Creator), Kokovay, E. (Creator), Hughes, T. R. (Creator), Morris, Q. D. (Creator), Galante, P. A. F. (Creator), Tiziani, S. (Creator) & Penalva, L. O. F. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.12774927, https://springernature.figshare.com/articles/dataset/Additional_file_15_of_The_RNA-binding_protein_SERBP1_functions_as_a_novel_oncogenic_factor_in_glioblastoma_by_bridging_cancer_metabolism_and_epigenetic_regulation/12774927
Dataset
Additional file 7 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation
Kosti, A. (Creator), De Araujo, P. R. (Contributor), Li, W.-Q. (Creator), Guardia, G. D. A. (Creator), Chiou, J. (Creator), Yi, C. (Creator), Ray, D. (Creator), Meliso, F. (Creator), Li, Y.-M. (Creator), Delambre, T. (Creator), Qiao, M. (Creator), Burns, S. S. (Creator), Lorbeer, F. K. (Creator), Georgi, F. (Creator), Flosbach, M. (Creator), Klinnert, S. (Creator), Jenseit, A. (Creator), Lei, X. (Creator), Sandoval, C. R. (Creator), Ha, K. (Creator), Zheng, H. (Creator), Pandey, R. (Creator), Gruslova, A. (Creator), Gupta, Y. K. (Creator), Brenner, A. (Creator), Kokovay, E. (Creator), Hughes, T. R. (Creator), Morris, Q. D. (Creator), Galante, P. A. F. (Creator), Tiziani, S. (Creator) & Penalva, L. O. F. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.12774954, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_The_RNA-binding_protein_SERBP1_functions_as_a_novel_oncogenic_factor_in_glioblastoma_by_bridging_cancer_metabolism_and_epigenetic_regulation/12774954
Dataset
Additional file 9 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation
Kosti, A. (Creator), De Araujo, P. R. (Contributor), Li, W.-Q. (Creator), Guardia, G. D. A. (Creator), Chiou, J. (Creator), Yi, C. (Creator), Ray, D. (Creator), Meliso, F. (Creator), Li, Y.-M. (Creator), Delambre, T. (Creator), Qiao, M. (Creator), Burns, S. S. (Creator), Lorbeer, F. K. (Creator), Georgi, F. (Creator), Flosbach, M. (Creator), Klinnert, S. (Creator), Jenseit, A. (Creator), Lei, X. (Creator), Sandoval, C. R. (Creator), Ha, K. (Creator), Zheng, H. (Creator), Pandey, R. (Creator), Gruslova, A. (Creator), Gupta, Y. K. (Creator), Brenner, A. (Creator), Kokovay, E. (Creator), Hughes, T. R. (Creator), Morris, Q. D. (Creator), Galante, P. A. F. (Creator), Tiziani, S. (Creator) & Penalva, L. O. F. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.12774960, https://springernature.figshare.com/articles/dataset/Additional_file_9_of_The_RNA-binding_protein_SERBP1_functions_as_a_novel_oncogenic_factor_in_glioblastoma_by_bridging_cancer_metabolism_and_epigenetic_regulation/12774960
Dataset
Human PrimPol extending from the correct primer base C opposite the 8-oxoguanine lesion
Rechkoblit, O. (Contributor), Johnson, R. E. (Contributor), Gupta, Y. K. (Contributor), Prakash, L. (Contributor), Prakash, S. (Contributor) & Aggarwal, A. K. (Contributor), Protein Data Bank (PDB), Jun 30 2021
DOI: 10.2210/pdb7JL8/pdb, https://www.wwpdb.org/pdb?id=pdb_00007jl8
Dataset
Additional file 6 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation
Kosti, A. (Creator), De Araujo, P. R. (Contributor), Li, W.-Q. (Creator), Guardia, G. D. A. (Creator), Chiou, J. (Creator), Yi, C. (Creator), Ray, D. (Creator), Meliso, F. (Creator), Li, Y.-M. (Creator), Delambre, T. (Creator), Qiao, M. (Creator), Burns, S. S. (Creator), Lorbeer, F. K. (Creator), Georgi, F. (Creator), Flosbach, M. (Creator), Klinnert, S. (Creator), Jenseit, A. (Creator), Lei, X. (Creator), Sandoval, C. R. (Creator), Ha, K. (Creator), Zheng, H. (Creator), Pandey, R. (Creator), Gruslova, A. (Creator), Gupta, Y. K. (Creator), Brenner, A. (Creator), Kokovay, E. (Creator), Hughes, T. R. (Creator), Morris, Q. D. (Creator), Galante, P. A. F. (Creator), Tiziani, S. (Creator) & Penalva, L. O. F. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.12774951.v1, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_The_RNA-binding_protein_SERBP1_functions_as_a_novel_oncogenic_factor_in_glioblastoma_by_bridging_cancer_metabolism_and_epigenetic_regulation/12774951/1
Dataset

Yogesh K Gupta

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Collaborations and top research areas from the last five years

Dive into details

Fine-tuning of gene expression through the Mettl3-Mettl14-Dnmt1 axis controls ESC differentiation

Structural insights into the assembly and regulation of 2′-O RNA methylation by SARS-CoV-2 nsp16/nsp10

AI is a viable alternative to high throughput screening: a 318-target study

Correction to: AI is a viable alternative to high throughput screening: a 318-target study (Scientific Reports, (2024), 14, 1, (7526), 10.1038/s41598-024-54655-z)

Erratum: Correction for Chiem et al., "Identification of In Vitro Inhibitors of Monkeypox Replication" (Microbiology spectrum (2023) 11 4 (e0474522))

Additional file 15 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

Additional file 7 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

Additional file 9 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

Human PrimPol extending from the correct primer base C opposite the 8-oxoguanine lesion

Additional file 6 of The RNA-binding protein SERBP1 functions as a novel oncogenic factor in glioblastoma by bridging cancer metabolism and epigenetic regulation

Yogesh K Gupta

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets