Datasets
- 50 - 75 out of 75 results
Search results
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A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data
Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3645446, https://figshare.com/collections/A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/3645446
Dataset
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Age-associated genes in human mammary gland drive human breast cancer progression
Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020
DOI: 10.6084/m9.figshare.c.5022674.v1, https://springernature.figshare.com/collections/Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/5022674/1
Dataset
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MBDDiff: an R package designed specifically for processing MBDcap-seq datasets
Liu, Y. (Contributor), Wilson, D. (Creator), Leach, R. J. (Creator) & Chen, Y. (Contributor), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3634943.v1, https://figshare.com/collections/MBDDiff_an_R_package_designed_specifically_for_processing_MBDcap-seq_datasets/3634943/1
Dataset
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CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training
Mostavi, M. (Creator), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor) & Huang, Y. (Creator), Figshare, 2021
DOI: 10.6084/m9.figshare.c.5422418.v1, https://springernature.figshare.com/collections/CancerSiamese_one-shot_learning_for_predicting_primary_and_metastatic_tumor_types_unseen_during_model_training/5422418/1
Dataset
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Additional file 2: Figure S2. of A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data
Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3645446_d1, https://springernature.figshare.com/articles/figure/Additional_file_2_Figure_S2_of_A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/4472075
Dataset
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Additional file 1: Figure S1. of A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data
Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016
DOI: 10.6084/m9.figshare.c.3645446_d3, https://springernature.figshare.com/articles/figure/Additional_file_1_Figure_S1_of_A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/4472081
Dataset
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PARP1-MGMT complex underpins pathway crosstalk in O6-methylguanine repair
Cropper, J. D. (Creator), Alimbetov, D. S. (Creator), Brown, K. T. G. (Creator), Likhotvorik, R. I. (Creator), Robles, A. J. (Creator), Guerra, J. T. (Creator), He, B. (Creator), Chen, Y. (Creator), Kwon, Y. (Creator) & Kurmasheva, R. T. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.c.6249616.v1, https://springernature.figshare.com/collections/PARP1-MGMT_complex_underpins_pathway_crosstalk_in_O6-methylguanine_repair/6249616/1
Dataset
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CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.c.4387862.v1, https://springernature.figshare.com/collections/CeL-ID_cell_line_identification_using_RNA-seq_data/4387862/1
Dataset
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CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.c.4387862, https://springernature.figshare.com/collections/CeL-ID_cell_line_identification_using_RNA-seq_data/4387862
Dataset
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Additional file 1: of CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.7666775, https://springernature.figshare.com/articles/Additional_file_1_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666775
Dataset
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Imipramine Blue: A potent therapeutic regimen that suppresses breast cancer growth and metastasis
Rajamanickam, S. (Contributor), Panneerdoss, S. (Contributor), Gorthi, A. (Contributor), Timilsina, S. (Contributor), Onyeagucha, B. (Contributor), Kovalskyy, D. (Contributor), Ivanov, D. (Contributor) & Chen, Y. (Contributor), ArrayExpress, 2016
https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-72363
Dataset
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Astrocyte elevated gene-1 (AEG-1) and c-Myc cooperate to promote hepatocarcinogenesis
Srivastava, J. (Contributor), Siddiq, A. (Contributor), Gredler, R. (Contributor), Rajasekaran, D. (Contributor), Garcia, D. (Contributor), Lai, Z. (Contributor), Chen, Y. (Contributor), Balaji, U. (Contributor) & Sarkar, D. (Contributor), ArrayExpress, 2014
https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-61875
Dataset
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Additional file 1: of CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.7666775.v1, https://springernature.figshare.com/articles/Additional_file_1_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666775/1
Dataset
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MOESM3 of An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data
Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.11479428, https://springernature.figshare.com/articles/MOESM3_of_An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/11479428
Dataset
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MOESM2 of An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data
Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.11479425.v1, https://springernature.figshare.com/articles/MOESM2_of_An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/11479425/1
Dataset
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Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival
Chiu, Y.-C. (Contributor), Wang, L.-J. (Creator), Lu, T.-P. (Contributor), Hsiao, T.-H. (Contributor), Chuang, E. Y. (Creator) & Chen, Y. (Contributor), Figshare, 2017
DOI: 10.6084/m9.figshare.c.3704557.v1, https://figshare.com/collections/Differential_correlation_analysis_of_glioblastoma_reveals_immune_ceRNA_interactions_predictive_of_patient_survival/3704557/1
Dataset
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XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation
Liu, Y. (Creator), Wu, P. (Creator), Zhou, J. (Creator), Johnson-Pais, T. L. (Creator), Lai, Z. (Creator), Chowdhury, W. H. (Creator), Rodriguez, R. (Creator) & Chen, Y. (Creator), Figshare, 2017
DOI: 10.6084/m9.figshare.c.3895993, https://springernature.figshare.com/collections/XBSeq2_a_fast_and_accurate_quantification_of_differential_expression_and_differential_polyadenylation/3895993
Dataset
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PARP1-MGMT complex underpins pathway crosstalk in O6-methylguanine repair
Cropper, J. D. (Creator), Alimbetov, D. S. (Creator), Brown, K. T. G. (Creator), Likhotvorik, R. I. (Creator), Robles, A. J. (Creator), Guerra, J. T. (Creator), He, B. (Creator), Chen, Y. (Creator), Kwon, Y. (Creator) & Kurmasheva, R. T. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.c.6249616, https://springernature.figshare.com/collections/PARP1-MGMT_complex_underpins_pathway_crosstalk_in_O6-methylguanine_repair/6249616
Dataset
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An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data
Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.c.4801215.v1, https://springernature.figshare.com/collections/An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/4801215/1
Dataset
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Mouse Models of Alveolar/Embryonal Rhabdomyosarcoma & Spindle Cell Sarcomas
Nishijo, K. (Contributor), Yi, X. (Contributor), Pal, R. (Contributor), Abraham, J. (Contributor), Davis, S. (Contributor), Khan, J. (Contributor), Yu, Z. (Contributor), Chen, Y. (Contributor) & Keller, C. (Contributor), ArrayExpress, 2011
https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-22520
Dataset
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Additional file 3: of GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization
Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Zhang, T. (Contributor), Zhang, S. (Contributor), Huang, Y. (Contributor) & Chen, Y. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7502834, https://springernature.figshare.com/articles/Additional_file_3_of_GSAE_an_autoencoder_with_embedded_gene-set_nodes_for_genomics_functional_characterization/7502834
Dataset
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microRNA-449a functions as a tumor suppressor in neuroblastoma through inducing cell differentiation and cell cycle arrest
Zhao, Z. (Contributor), Ma, X. (Contributor), Sung, D. (Creator), Li, M. (Creator), Kosti, A. (Creator), Lin, G. (Creator), Chen, Y. (Contributor), Pertsemlidis, A. (Creator), Hsiao, T.-H. (Contributor) & Du, L. (Contributor), Taylor & Francis, 2015
DOI: 10.6084/m9.figshare.1332512, https://tandf.figshare.com/articles/dataset/microRNA_449a_functions_as_a_tumor_suppressor_in_neuroblastoma_through_inducing_cell_differentiation_and_cell_cycle_arrest/1332512
Dataset
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shinyDeepDR: a user-friendly R Shiny app for predicting anti-cancer drug response using deep learning
Wang, L.-J. (Creator), Ning, M. (Creator), Nayak, T. (Creator), Kasper, M. J. (Contributor), Monga, S. P. (Creator), Huang, Y. (Creator), Chen, Y. (Creator) & Chiu, Y.-C. (Creator), Figshare, 2024
DOI: 10.6084/m9.figshare.23925255.v2, https://figshare.com/articles/software/_b_shinyDeepDR_a_user-friendly_R_Shiny_app_for_predicting_anti-cancer_drug_response_using_deep_learning_b_/23925255/2
Dataset
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SETDB1 interactions with PELP1 contributes to breast cancer endocrine therapy resistance
Liu, Z. (Creator), Liu, J. (Creator), Ebrahimi, B. (Creator), Pratap, U. P. (Creator), He, Y. (Creator), Altwegg, K. A. (Creator), Tang, W. (Creator), Li, X. (Creator), Lai, Z. (Creator), Chen, Y. (Creator), Shen, L. (Creator), Sareddy, G. R. (Creator), Viswanadhapalli, S. (Creator), Tekmal, R. R. (Creator), Rao, M. K. (Creator) & Vadlamudi, R. K. (Creator), Figshare, 2022
DOI: 10.6084/m9.figshare.c.5939816, https://springernature.figshare.com/collections/SETDB1_interactions_with_PELP1_contributes_to_breast_cancer_endocrine_therapy_resistance/5939816
Dataset
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microRNA-449a functions as a tumor suppressor in neuroblastoma through inducing cell differentiation and cell cycle arrest
Zhao, Z. (Contributor), Pertsemlidis, A. (Creator), Du, L. (Contributor), Ma, X. (Contributor), Sung, D. (Creator), Li, M. (Creator), Kosti, A. (Creator), Lin, G. (Creator), Chen, Y. (Contributor) & Hsiao, T.-H. (Contributor), Taylor & Francis, 2015
DOI: 10.6084/m9.figshare.1332512.v5, https://tandf.figshare.com/articles/dataset/microRNA_449a_functions_as_a_tumor_suppressor_in_neuroblastoma_through_inducing_cell_differentiation_and_cell_cycle_arrest/1332512/5
Dataset