Yidong Chen

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306 Article
46 Conference contribution
7 Conference article
6 Review article
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Therapeutic optimization of LIPA targeting to induce endoplasmic reticulum stress and cell death in ovarian cancer
Viswanadhapalli, S., Lee, T. K., Elmore, S., Sharma, G., Gopalam, R., Panneerdoss, D. M., Liu, X., Parra, K., Reese, T., Hsieh, M., Pratap, U. P., Yang, X., Ebrahimi, B., Li, X., Neal, H., Chen, C. Y., Kassees, K., Cervantes, C., Baker, A. & Subbarayalu, P. & 15 others, Ramirez, P., Lyons, Y. A., Lai, Z., Chen, Y., Boerma, J. W., LoCoco, P. M., Clanton, N. A., Xu, Z., Rao, M., Rao, T. R., Kost, E., Sareddy, G. R., Raj, G. V., Ahn, J. M. & Vadlamudi, R. K., Mar 10 2026, In: Oncogene. 45, 8, p. 790-804 15 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Benchmarking mouse contamination removing protocols in patient-derived xenografts genomic profiling
Bhandari, M., He, F., Rogojina, A., Li, F., Zou, Y., Jiang, J., Lai, Z., Houghton, P., Kurmasheva, R. T., Chen, Y., Wang, X. & Zheng, S., Dec 2025, In: npj Precision Oncology. 9, 1, 113.
Research output: Contribution to journal › Article › peer-review

Open Access
Cell type prediction with neighborhood-enhanced cellular embedding using deep learning on hematoxylin and eosin-stained images
Phan, N. N., Wang, H., Nayak, T., Ye, Z., Chiu, Y. C., Jin, Y., Huang, Y. & Chen, Y., Jan 2025, In: Computational and Structural Biotechnology Journal. 27, p. 3182-3190 9 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Dissection of tumoral niches using spatial transcriptomics and deep learning
Paniagua, K., Jin, Y. F., Chen, Y., Gao, S. J., Huang, Y. & Flores, M., Apr 18 2025, In: iScience. 28, 4, 112214.
Research output: Contribution to journal › Article › peer-review

Open Access
3 Link opens in a new tab Scopus citations
Dual inhibition of MAPK and TORC1 signaling retards development of radiation resistance in pediatric BRAF^V600E glioma models
Li, F., Bondra, K. M., Wang, H., Kurmashev, D., Mukherjee, B., Kanji, S., Habib, A. A., Chen, Y., Zheng, S., Burma, S. & Houghton, P. J., Jul 1 2025, In: Neuro-oncology. 27, 7, p. 1787-1800 14 p.
Research output: Contribution to journal › Article › peer-review

Open Access
2 Link opens in a new tab Scopus citations

CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.c.4387862, https://springernature.figshare.com/collections/CeL-ID_cell_line_identification_using_RNA-seq_data/4387862
Dataset
Additional file 2: of CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.7666778.v1, https://springernature.figshare.com/articles/Additional_file_2_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666778/1
Dataset
Additional file 1: of CeL-ID: cell line identification using RNA-seq data
Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019
DOI: 10.6084/m9.figshare.7666775.v1, https://springernature.figshare.com/articles/Additional_file_1_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666775/1
Dataset
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival
Chiu, Y.-C. (Contributor), Wang, L.-J. (Creator), Lu, T.-P. (Contributor), Hsiao, T.-H. (Contributor), Chuang, E. Y. (Creator) & Chen, Y. (Contributor), Figshare, 2017
DOI: 10.6084/m9.figshare.c.3704557, https://figshare.com/collections/Differential_correlation_analysis_of_glioblastoma_reveals_immune_ceRNA_interactions_predictive_of_patient_survival/3704557
Dataset
Additional file 3: of GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization
Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Zhang, T. (Contributor), Zhang, S. (Contributor), Huang, Y. (Contributor) & Chen, Y. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7502834.v1, https://springernature.figshare.com/articles/Additional_file_3_of_GSAE_an_autoencoder_with_embedded_gene-set_nodes_for_genomics_functional_characterization/7502834/1
Dataset

Yidong Chen

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

Therapeutic optimization of LIPA targeting to induce endoplasmic reticulum stress and cell death in ovarian cancer

Benchmarking mouse contamination removing protocols in patient-derived xenografts genomic profiling

Cell type prediction with neighborhood-enhanced cellular embedding using deep learning on hematoxylin and eosin-stained images

Dissection of tumoral niches using spatial transcriptomics and deep learning

Dual inhibition of MAPK and TORC1 signaling retards development of radiation resistance in pediatric BRAF^V600E glioma models

CeL-ID: cell line identification using RNA-seq data

Additional file 2: of CeL-ID: cell line identification using RNA-seq data

Additional file 1: of CeL-ID: cell line identification using RNA-seq data

Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival

Additional file 3: of GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

Yidong Chen

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets