Joe R & Teresa Lozano School of Medicine

Research Output 1967 2019

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Conference contribution
2019

Cellular refractive index comparison of various prostate cancer and noncancerous cell lines via photonic-crystal biosensor

Deluna, F., Cadena, M., Wang, B., Sun, L. & Ye, J. Y., Jan 1 2019, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII. Farkas, D. L., Tarnok, A. & Leary, J. F. (eds.). SPIE, 108810K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10881).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optics and Photonics
Refractometry
Biosensing Techniques
Photonic crystals
bioinstrumentation

Integrating quantitative imaging and computational modeling to predict the spatiotemporal distribution of 186Re nanoliposomes for recurrent glioblastoma treatment

Woodall, R. T., Hormuth, D. A., Abdelmalik, M. R. A., Wu, C., Feng, X., Phillips, W. T., Bao, A., Hughes, T. J. R., Brenner, A. & Yankeelov, T. E., Jan 1 2019, Medical Imaging 2019: Physics of Medical Imaging. Bosmans, H., Chen, G-H. & Schmidt, T. G. (eds.). SPIE, 109483M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10948).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Glioblastoma
Single-Photon Emission-Computed Tomography
Imaging techniques
Single photon emission computed tomography
Convection
2018

In-vivo fluorescence detection of breast cancer growth factor receptors by fiber-optic probe

Bustamante, G., Wang, B., Deluna, F., Sun, L. & Ye, J. Y., Jan 1 2018, Optical Biopsy XVI: Toward Real-Time Spectroscopic Imaging and Diagnosis. SPIE, Vol. 10489. 104890E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Growth Factor Receptors
breast
Fiber optics
Tumors
fiber optics
1 Citation (Scopus)

Label-free in vitro prostate cancer cell detection via photonic-crystal biosensor

Deluna, F., Ding, X., Sagredo, I., Bustamante, G., Sun, L. & Ye, J. Y., Jan 1 2018, Biophysics, Biology and Biophotonics III: The Crossroads. SPIE, Vol. 10504. 105040D

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optics and Photonics
Biosensing Techniques
Photonic crystals
bioinstrumentation
Biosensors

Quantitative image-based phosphorus-31 MR spectroscopy for evaluating age-based differences in skeletal muscle metabolites

Deng, S., Ripley, E. M., Vasquez, J. A., Tripathy, D., Defronzo, R. A. & Clarke, G. D., Jan 1 2018, Medical Imaging 2018: Physics of Medical Imaging. SPIE, Vol. 10573. 105732T

Research output: Chapter in Book/Report/Conference proceedingConference contribution

skeletal muscle
Phosphocreatine
metabolites
Metabolites
Phosphorus
2017
2 Citations (Scopus)

Biologically relevant simulations for validating risk models under small-sample conditions

Bokov, A. F., Manuel, L. S., Tirado-Ramos, A., Gelfond, J. A. & Pletcher, S. D., Sep 1 2017, 2017 IEEE Symposium on Computers and Communications, ISCC 2017. Institute of Electrical and Electronics Engineers Inc., p. 290-295 6 p. 8024544

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Small Sample
Parameter Space
Sample Size
Survival Model
Simulation
4 Citations (Scopus)

Evaluation of a novel label-free photonic-crystal biosensor imaging system for the detection of prostate cancer cells

DeLuna, F., Ding, X. F., Sun, L. & Ye, J. Y., Jan 1 2017, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XV. SPIE, Vol. 10068. 100681H

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optics and Photonics
Biosensing Techniques
Photonic crystals
bioinstrumentation
Biosensors

Genapp integrated with openstack supports elastic computing on jetstream technical paper

Brookes, E. H. & Savelyev, A., Jul 9 2017, PEARC 2017 - Practice and Experience in Advanced Research Computing 2017: Sustainability, Success and Impact. Association for Computing Machinery, Vol. Part F128771. a11

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cloud computing
Graphical user interfaces
Sustainable development

Identification and localization of trauma-related biomarkers using matrix assisted laser desorption/ionization imaging mass spectrometry

Jones, K., Reilly, M. A. & Glickman, R. D., 2017, Visualizing and Quantifying Drug Distribution in Tissue. SPIE, Vol. 10046. 100460G

Research output: Chapter in Book/Report/Conference proceedingConference contribution

biomarkers
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Biomarkers
Ionization
Mass spectrometry

ThIEF: Finding genome-wide trajectories of epigenetics marks

Polishko, A., Hasan, M. A., Pan, W., Bunnik, E. M., Le Roch, K. & Lonardi, S., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, Vol. 88. 19

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genes
Trajectories
Flavors
DNA sequences
Linear programming

Using Prevalence Patterns to Discover Un-mapped Flowsheet Data in an Electronic Health Record Data Warehouse

Bokov, A. F., Bos, A. B., Manuel, L. S., Tirado-Ramos, A., Kittrell, P., Jackson, C. E. & Olin, G. P., Nov 10 2017, Proceedings - 2017 IEEE 30th International Symposium on Computer-Based Medical Systems, CBMS 2017. Institute of Electrical and Electronics Engineers Inc., Vol. 2017-June. p. 324-327 4 p. 8104211

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Flowcharting
Data warehouses
Electronic Health Records
Health
Informatics
2016
1 Citation (Scopus)

All optical experimental design for neuron excitation, inhibition, and action potential detection

Walsh, A. J., Tolstykh, G., Martens, S., Sedelnikova, A., Ibey, B. L. & Beier, H. T., 2016, Clinical and Translational Neurophotonics; Neural Imaging and Sensing; and Optogenetics and Optical Manipulation. SPIE, Vol. 9690. 96901P

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optical design
neurons
Design of experiments
Action Potentials
Neurons
1 Citation (Scopus)

Collapsed variational Bayesian inference of the author-topic model: Application to large-scale coordinate-based meta-analysis

Ngo, G. H., Eickhoff, S. B., Fox, P. T. & Yeo, B. T. T., Aug 24 2016, PRNI 2016 - 6th International Workshop on Pattern Recognition in Neuroimaging. Institute of Electrical and Electronics Engineers Inc., 7552332

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Brain
Chemical activation
Experiments

Conductivity affects nanosecond electrical pulse induced pressure transient formation

Roth, C. C., Barnes, R. A., Ibey, B. L., Beier, H. T. & Glickman, R. D., 2016, Optical Interactions with Tissue and Cells XXVII. SPIE, Vol. 9706. 97060V

Research output: Chapter in Book/Report/Conference proceedingConference contribution

transient pressures
Blood Pressure
Pressure
conductivity
pulses

MRI based biomarker for brain aging in rodents and non-human primates

Frankea, K., Dahnke, R., Clarke, G. D., Kuo, A., Li, C., Nathanielsz, P., Schwab, M. & Gaser, C., Aug 24 2016, PRNI 2016 - 6th International Workshop on Pattern Recognition in Neuroimaging. Institute of Electrical and Electronics Engineers Inc., 7552326

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biomarkers
Magnetic resonance imaging
Brain
Aging of materials
Trajectories

Power spectrum-based genomic feature extraction from high-throughput ChIP-seq sequences

Tang, B., Zhou, Y. & Jin, V. X., Jan 1 2016, Intelligent Computing Theories and Application - 12th International Conference, ICIC 2016, Proceedings. Premaratne, P., Huang, D-S. & Bevilacqua, V. (eds.). Springer Verlag, p. 439-447 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9771).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Transcription factors
Binding sites
Transcription Factor
Power spectrum
Power Spectrum

Protein-protein binding before and after photo-modification of albumin

Rozinek, S. C., Glickman, R. D., Thomas, R. J. & Brancaleon, L., 2016, Optical Interactions with Tissue and Cells XXVII. SPIE, Vol. 9706. 97061J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

albumins
Protein Binding
Serum Albumin
Albumins
serums
1 Citation (Scopus)

Seizure onset zone localization from many invasive EEG channels using directed functional connectivity

Van Mierlo, P., Coito, A., Vulliémoz, S. & Lie, O., Nov 28 2016, 2016 24th European Signal Processing Conference, EUSIPCO 2016. European Signal Processing Conference, EUSIPCO, Vol. 2016-November. p. 255-259 5 p. 7760249

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electroencephalography
Transfer functions
3 Citations (Scopus)

Short infrared (IR) laser pulses can induce nanoporation

Roth, C. C., Barnes, R. A., Ibey, B. L., Glickman, R. D. & Beier, H. T., 2016, Clinical and Translational Neurophotonics; Neural Imaging and Sensing; and Optogenetics and Optical Manipulation. SPIE, Vol. 9690. 96901L

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Infrared lasers
Nanopores
infrared lasers
Thallium
Action Potentials
2015
1 Citation (Scopus)

Analyzing differential regulatory networks modulated by continuous-state genomic features in glioblastoma multiforme

Chiu, Y. C., Liang, K. W., Hsiao, T. H., Chen, Y. & Chuang, E. Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 171-176 6 p. 7359676

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene Regulatory Networks
Glioblastoma
Modulators
Genes
MicroRNAs

A performance predictor for ultrascan supercomputer calculations

Kim, H., Brookes, E. H. & Demeler, B., Jul 26 2015, ACM International Conference Proceeding Series. Association for Computing Machinery, Vol. 2015-July. a42

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Supercomputers
Spectrum analysis
1 Citation (Scopus)

Cells exposed to nanosecond electrical pulses exhibit biomarkers of mechanical stress

Roth, C. C., Barnes, R. A., Ibey, B. L., Beier, H. T., Moen, E. K. & Glickman, R. D., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9326. 932612

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Mechanical Stress
biomarkers
Biomarkers
Cell membranes
Cell Membrane
2 Citations (Scopus)

GenApp module execution and airavata integration

Brookes, E. H., Anjum, N., Curtis, J. E., Marru, S., Singh, R. & Pierce, M., Jan 23 2015, Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 9-12 4 p. 7021841

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Servers
Systems science
Computer workstations
Middleware
User interfaces

Haptics-enabled surgical training system with guidance using deep learning

Biglari, E., Feng, M., Quarles, J., Sako, E. Y., Calhoon, J. H., Rodriguez, R. & Feng, Y., 2015, Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). Springer Verlag, Vol. 9177. p. 267-278 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9177).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Biopsy
Haptics
Guidance
Surgery
Virtual reality
1 Citation (Scopus)

Hybrid feature selection methods for online biomedical publication classification

Ma, L., Zhang, Y., Sunderraman, R., Fox, P. T., Laird, A. R., Turner, J. A. & Turner, M. D., Oct 16 2015, 2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2015. Institute of Electrical and Electronics Engineers Inc., 7300320

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Data Mining
Publications
Feature extraction
Labels
Metadata

Model-based and context-specific background correction and differential methylation testing for MBDCap-seq

Liu, Y., Wilson, D., Leach, R. J. & Chen, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 214-219 6 p. 7359683

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Methylation
Genetic Promoter Regions
DNA Methylation
Testing
Genes
4 Citations (Scopus)

Online biomedical publication classification using Multi-Instance Multi-Label algorithms with feature reduction

Ren, D., Ma, L., Zhang, Y., Sunderraman, R., Fox, P. T., Laird, A. R., Turner, J. A. & Turner, M. D., Sep 11 2015, Proceedings of 2015 IEEE 14th International Conference on Cognitive Informatics and Cognitive Computing, ICCI*CC 2015. Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. 7259391

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Publications
Labels
Functional neuroimaging
Functional Neuroimaging
Data Mining
8 Citations (Scopus)

Opto-acoustic image fusion technology for diagnostic breast imaging in a feasibility study

Zalev, J., Clingman, B., Herzog, D., Miller, T., Ulissey, M., Stavros, A. T., Oraevsky, A., Lavin, P., Kist, K. A., Dornbluth, N. C. & Otto, P. M., 2015, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9419. 941909

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Image fusion
Feasibility Studies
Diagnostic Imaging
Acoustics
breast

Patho-finder-A fast and accurate program for pathogen identification through RNA-seq

Wu, C. T., Hsiao, T. H., Chiu, Y. C., Hsu, Y. C., Chuang, E. Y. & Chen, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Institute of Electrical and Electronics Engineers Inc., p. 1148-1151 4 p. 7359843

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Workflow
Pathogens
RNA
RNA Sequence Analysis
Viruses
17 Citations (Scopus)

The apache airavata application programming interface: Overview and evaluation with the Ultrascan Science Gateway

Pierce, M., Marru, S., Demeler, B., Singh, R. & Gorbet, G., Jan 23 2015, Proceedings of GCE 2014: 9th Gateway Computing Environments Workshop, held in conjunction with SC 2014: The International Conference for High Performance Computing, Networking, Storage and Analysis. Institute of Electrical and Electronics Engineers Inc., p. 25-29 5 p. 7021845

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gateways (computer networks)
Application programming interfaces (API)
Metadata
Interfaces (computer)
2014

Abdominal adipose tissue quantification on water-suppressed and non-water-suppressed MRI at 3T using semi-automated FCM clustering algorithm

Valaparla, S. K., Peng, Q., Gao, F. & Clarke, G. D., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9038. 903802

Research output: Chapter in Book/Report/Conference proceedingConference contribution

adipose tissues
Abdominal Fat
Clustering algorithms
Magnetic resonance imaging
Cluster Analysis
4 Citations (Scopus)

An open extensible multitarget application generation tool for simple rapid deployment of multiscale scientific codes

Brookes, E. H., 2014, ACM International Conference Proceeding Series. Association for Computing Machinery, 53

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Graphical user interfaces
User interfaces
4 Citations (Scopus)

Characterization of acoustic shockwaves generated by exposure to nanosecond electrical pulses

Roth, C. C., Maswadi, S., Ibey, B. L., Beier, H. T. & Glickman, R. D., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 8941. 89411O

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cell membranes
Acoustics
Cell Membrane
membranes
acoustics
1 Citation (Scopus)

Combining Meta- and mega-analytic approaches for multi-site diffusion imaging based genetic studies: From the enigma-DTI working group

Jahanshad, N., Kochunov, P., Nichols, T. E., Sprooten, E., Mandl, R. C., Almasy, L., Brouwer, R. M., Curran, J. E., De Zubicaray, G. I., Dimitrova, R., Fox, P. T., Hong, L. E., Landman, B. A., Lemaitre, H., Lopez, L., Martin, N. G., McMahon, K. L., Mitchell, B. D., Olvera, R. L., Peterson, C. P. & 17 othersSussmann, J. E., Toga, A. W., Wardlaw, J. M., Wright, M. J., Wright, S. N., Bastin, M. E., McIntosh, A. M., Boomsma, D. I., Kahn, R. S., Den Braber, A., Deary, I. J., Pol, H. E. H., Williamson, D., Blangero, J., Van't Ent, D., Glahn, D. C. & Thompson, P. M., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 1234-1238 5 p. 6868099

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Meta-Analysis
Brain
Anisotropy
Imaging techniques
Sample Size
1 Citation (Scopus)

Detecting differentially methylated mRNA from MeRIP-Seq with likelihood ratio test

Zhang, L., Meng, J., Liu, H., Cui, X., Zhang, S. W., Chen, Y. & Huang, Y., Feb 5 2014, 2014 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2014. Institute of Electrical and Electronics Engineers Inc., p. 1368-1371 4 p. 7032349

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Methylation
RNA
Throughput
Messenger RNA
2 Citations (Scopus)

Fiber optic fluorescence microscopy for functional brain imaging in awake, mobile mice

Cha, J., Paukert, M., Bergles, D. E. & Kang, J. U., Jan 1 2014, Optical Techniques in Neurosurgery, Neurophotonics, and Optogenetics. SPIE, Vol. 8928. 89282N

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Functional Neuroimaging
Fluorescence microscopy
Fluorescence Microscopy
Fiber optics
brain

Intramyocellular lipid dependence on skeletal muscle fiber type and orientation characterized by diffusion tensor imaging and 1H-MRS

Valaparla, S. K., Gao, F., Abdul-ghani, M. A. & Clarke, G. D., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9034. 90340S

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Diffusion tensor imaging
muscle fibers
skeletal muscle
Diffusion Tensor Imaging
Skeletal Muscle Fibers
1 Citation (Scopus)

Multisensory interface for 5D stem cell image volumes

Koerner, M., Wait, E., Winter, M., Bjornsson, C., Cearley, E. K., Wang, Y., Goderie, S. K., Temple, S. & Cohen, A. R., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 1178-1181 4 p. 6943806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Real time systems
Stem cells
Cell Size
Labeling
Microscopic examination
6 Citations (Scopus)

Opto-acoustic breast imaging with co-registered ultrasound

Zalev, J., Clingman, B., Herzog, D., Miller, T., Stavros, A. T., Oraevsky, A., Kist, K. A., Dornbluth, N. C. & Otto, P. M., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 9038. 90381J

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Acoustics
breast
Breast
tumors
Ultrasonics
7 Citations (Scopus)

Optoacoustic microscopy using laser beam deflection technique

Khachatryan, E., Maswadi, S., Tsyboulski, D. A., Barnes, E., Sardar, D., Oraevsky, A. A., Nash, K. & Glickman, R., 2014, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. SPIE, Vol. 8943. 89432T

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Photoacoustic effect
Confocal Microscopy
Laser beams
deflection
Microscopic examination

Transcriptomic analysis by RNA-Seq and gene enrichment analysis

Nixon, S. E., González-Peña, D., Lawson, M. A., McCusker, R. H., O'connor, J., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 27-31 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

RNA
Genes
Gene Expression Profiling
Binomial Distribution
Biological Phenomena
2013

Antagonistic activation patterns underlie multi-functionality of the right temporo-parietal junction

Bzdok, D., Langner, R., Eickhoff, S., Laird, A. R. & Fox, P. T., 2013, Proceedings - 2013 3rd International Workshop on Pattern Recognition in Neuroimaging, PRNI 2013. p. 62-65 4 p. 6603557

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Chemical activation
Brain
Association reactions
Processing

BIMMER: A Bi-layer hidden Markov model for differential methylation analysis

Mao, Z., Huang, H., Chen, Y. & Huang, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 99-102 4 p. 6732470

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Methylation
Hidden Markov models
Bins
Genes
Costs
7 Citations (Scopus)

Clinical feasibility study of combined opto-acoustic and ultrasonic imaging modality providing coregistered functional and anatomical maps of breast tumors

Zalev, J., Clingman, B., Smith, R. J., Herzog, D., Miller, T., Stavros, A. T., Ermilov, S., Conjusteau, A., Tsyboulski, D., Oraevsky, A. A., Kist, K. A., Dornbluth, N. C. & Otto, P. M., 2013, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8581. 858103

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Acoustic imaging
acoustic imaging
Ultrasonic imaging
Feasibility Studies
Acoustics

Detection of oxidative stress biomarker-induced assembly of gold nanoparticles in retinal pigment epithelial cells

Yasmin, Z., Lee, Y., Maswadi, S., Glickman, R. & Nash, K. L., 2013, Progress in Biomedical Optics and Imaging - Proceedings of SPIE. Vol. 8579. 85790E

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oxidative stress
Retinal Pigments
biomarkers
Biomarkers
pigments

Differential analysis of rna methylation sequencing data

Cui, X., Meng, J., Rao, M. K., Chen, Y. & Huang, Y., 2013, 2013 IEEE Global Conference on Signal and Information Processing, GlobalSIP 2013 - Proceedings. p. 41-42 2 p. 6736806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Methylation
RNA
Software packages
Molecules
Cells
2 Citations (Scopus)

Implementation of just in time and revamped engineering math courses to improve retention and graduation rates

Shadaram, M., Alger, B. & Agrawal, M., 2013, Proceedings - Frontiers in Education Conference, FIE. p. 154-158 5 p. 6684805

Research output: Chapter in Book/Report/Conference proceedingConference contribution

engineering
Students
student
time
mathematics
3 Citations (Scopus)

Improvements of the ultrascan scientific gateway to enable computational jobs on large-scale and open-standards based cyberinfrastructures

Memon, S., Attig, N., Gorbet, G., Gunathilake, L., Riedel, M., Lippert, T., Marru, S., Grimshaw, A., Janetzko, F., Demeler, B. & Singh, R., 2013, ACM International Conference Proceeding Series. 39

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Web browsers
Architectural design
Interoperability
Software packages
Molecules

Integration of gene expression, genome wide DNA methylation, and gene networks for clinical outcome prediction in ovarian cancer

Zhang, L., Liu, H., Meng, J., Wang, X., Chen, Y. & Huangi, Y., 2013, Proceedings - 2013 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2013. p. 535-538 4 p. 6732553

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Genes
Methylation
DNA Methylation
Linear regression

Manifestations of primary blast-induced ocular trauma

Reilly, M. A., Sherwood, D., Watson, R., Gray, W., Sponsel, W. E., Thoe, K., Lund, B. & Glickman, R., 2013, ASME 2013 Summer Bioengineering Conference, SBC 2013. Vol. 1 B.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Shock tubes
Wounds and Injuries
Shock
Swine
Equipment and Supplies