Joe R & Teresa Lozano Long School of Medicine

Research output

Research output per year 1967 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025

• 556 h-index
• 16990 Article
• 2349 Review article
• 635 Comment/debate
• 629 Chapter
• 1290 More
  • 524 Letter
  • 478 Editorial
  • 109 Conference contribution
  • 100 Short survey
  • 25 Book
  • 23 Conference article
  • 20 Foreword/postscript
  • 11 Paper

Research output per year

Research output per year

Search results

• 2024

  Extracting Biomedical Entities from Noisy Audio Transcripts

  Ebadi, N., Morgan, K., Tan, A., Linares, B., Osborn, S., Majors, E., Davis, J. & Rios, A., 2024, 2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation, LREC-COLING 2024 - Main Conference Proceedings. Calzolari, N., Kan, M.-Y., Hoste, V., Lenci, A., Sakti, S. & Xue, N. (eds.). European Language Resources Association (ELRA), p. 7023-7034 12 p. (2024 Joint International Conference on Computational Linguistics, Language Resources and Evaluation, LREC-COLING 2024 - Main Conference Proceedings).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Natural Language Processing 100%
  • Speech Recognition 100%
  • Face 25%
  • Spoken Language 25%
  • Noisy Environment 25%
• 2023

  Deep Attention Assisted Multi-resolution Networks for the Segmentation of White Matter Hyperintensities in Postmortem MRI Scans

  Nirmala, A. B., Rashid, T., Fadaee, E., Honnorat, N., Li, K., Charisis, S., Wang, D., Vemula, A., Li, J., Fox, P., Richardson, T. E., Walker, J. M., Bieniek, K., Seshadri, S. & Habes, M., 2023, Machine Learning in Clinical Neuroimaging - 6th International Workshop, MLCN 2023, Held in Conjunction with MICCAI 2023, Proceedings. Abdulkadir, A., Bathula, D. R., Dvornek, N. C., Govindarajan, S. T., Habes, M., Kumar, V., Leonardsen, E., Wolfers, T. & Xiao, Y. (eds.). Springer Science and Business Media Deutschland GmbH, p. 143-152 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14312 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Magnetic Resonance Imaging 100%
  • Neurodegenerative Disorder 20%

• Optimized Patient-Specific Catheter Placement for Convection-Enhanced Nanoparticle Delivery in Recurrent Glioblastoma

  Wu, C., Hormuth, D. A., Christenson, C., Woodall, R. T., Abdelmalik, M. R. A., Phillips, W. T., Hughes, T. J. R., Brenner, A. J. & Yankeelov, T. E., Nov 12 2023, Proceedings of 2023 SC Workshops of the International Conference on High Performance Computing, Network, Storage, and Analysis, SC Workshops 2023. Association for Computing Machinery, p. 119-120 2 p. (ACM International Conference Proceeding Series).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

• Polarized Hyperspectral Microscopic Imaging for White Blood Cells on Wright-Stained Blood Smear Slides

  Zhou, X., Mubarak, H. K., Ma, L., Palsgrove, D., Ortega, S., Callicó, G. M., Medina, E. A., Brimhall, B. B., Whitted, M. & Fei, B., 2023, Polarized Light and Optical Angular Momentum for Biomedical Diagnostics 2023. Ramella-Roman, J. C., Ma, H., Novikova, T., Elson, D. S. & Vitkin, I. A. (eds.). SPIE, 1238207. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12382).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Blood Smear 100%
  • Polarization 100%
  • Leukocyte 100%
  • Lymphocyte 20%
  • Diagnosis 20%
  1 Scopus citations
• 2022

  Cancer cell segmentation for cellularity prediction via a weakly labeled/strongly labeled hybrid convolutional neural network

  Chambers, D. R., Brimhall, B. B., Poole, D. R. & Medina, E. A., 2022, Medical Imaging 2022: Digital and Computational Pathology. Tomaszewski, J. E., Ward, A. D. & Levenson, R. M. (eds.). SPIE, 120390A. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12039).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Datum 100%
  • Prediction 66%
  • Convolutional Neural Network 66%
  • Pixel 33%
  • Pool 33%
  1 Scopus citations

• Collaborative Clustering Based on Adaptive Laplace Modeling for Neuroimaging Data Analysis

  Liu, H., Li, K., Toledo, J. B. & Habes, M., 2022, IEEE International Symposium on Circuits and Systems, ISCAS 2022. Institute of Electrical and Electronics Engineers Inc., p. 1630-1634 5 p. (Proceedings - IEEE International Symposium on Circuits and Systems; vol. 2022-May).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Modeling 100%
  • Neuroimaging Data 50%
  • Experimental Result 50%
  • Clinical Data 50%
  • Regularization 50%
• 2021

  Adaptive Squeeze-and-Shrink Image Denoising for Improving Deep Detection of Cerebral Microbleeds

  Liu, H., Rashid, T., Ware, J., Jensen, P., Austin, T., Nasrallah, I., Bryan, R., Heckbert, S. & Habes, M., 2021, Medical Image Computing and Computer Assisted Intervention – MICCAI 2021 - 24th International Conference, Proceedings. de Bruijne, M., de Bruijne, M., Cattin, P. C., Cotin, S., Padoy, N., Speidel, S., Zheng, Y. & Essert, C. (eds.). Springer Science and Business Media Deutschland GmbH, p. 265-275 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12906 LNCS).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Detection 100%
  • Deep Learning 80%
  • Sparsity 40%
  • Imaging Modality 20%
  • Real World 20%
  8 Scopus citations

• Data Mining Techniques for Prediction of Type 2 Diabetes leading to Cardiovascular Disease

  Islam, M. S., Belhaouari, S. B., Abdul-Ghani, M. & Qaraqe, M. K., Jun 14 2021, 7th IEEE World Forum on Internet of Things, WF-IoT 2021. Institute of Electrical and Electronics Engineers Inc., p. 321-325 5 p. (7th IEEE World Forum on Internet of Things, WF-IoT 2021).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Cardiovascular Disease 100%
  • Maturity Onset Diabetes of the Young 75%
  • Data Mining Technique 75%
  • Diseases 25%
  • Biological Marker 25%
• 2020

  Analysis of professional competencies for the clinical research data management profession

  Abouelenein, S., Williams, T., Baldner, J. & Zozus, M. N., Jun 16 2020, Digital Personalized Health and Medicine - Proceedings of MIE 2020. Pape-Haugaard, L. B., Lovis, C., Madsen, I. C., Weber, P., Nielsen, P. H. & Scott, P. (eds.). IOS Press, p. 1199-1200 2 p. (Studies in Health Technology and Informatics; vol. 270).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Datum 100%
  • Occupations 71%
  • Research 57%
  • Professional Personnel 42%
  • Managers 42%
  5 Scopus citations

• Document oriented graphical analysis and prediction

  Syed, S., Syed, M., Syeda, H. B., Prior, F., Zozus, M., Penning, M. L. & Orloff, M., Jun 16 2020, Digital Personalized Health and Medicine - Proceedings of MIE 2020. Pape-Haugaard, L. B., Lovis, C., Madsen, I. C., Weber, P., Nielsen, P. H. & Scott, P. (eds.). IOS Press, p. 183-187 5 p. (Studies in Health Technology and Informatics; vol. 270).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Graph Database 100%
  • Genetic Analysis 50%
  • Research Laboratory 50%
  • Clinical Data 50%
  • Structured Query Language 50%
  1 Scopus citations

• Effect of microtubule resonant frequencies on neuronal cells

  Rafati, Y., Cantu, J. C., Sedelnikova, A., Tolstykh, G. P., Peralta, X. G., Valdez, C. & Echchgadda, I., 2020, Optical Interactions with Tissue and Cells XXXI. Ibey, B. L. & Linz, N. (eds.). SPIE, 112381E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11238).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Microtubule 100%
  • Cells 100%
  • Microtubules 100%
  • Tubulin 55%
  • Neuron 44%
  2 Scopus citations

• Esource-enabled vs. Traditional clinical trial data collection methods: A site-level economic analysis

  Eisenstein, E. L., Garza, M. Y., Rocca, M., Gordon, G. S. & Zozus, M., Jun 16 2020, Digital Personalized Health and Medicine - Proceedings of MIE 2020. Pape-Haugaard, L. B., Lovis, C., Madsen, I. C., Weber, P., Nielsen, P. H. & Scott, P. (eds.). IOS Press, p. 961-965 5 p. (Studies in Health Technology and Informatics; vol. 270).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Data Collection 100%
  • Attractiveness 25%
  • Extracting Data 25%
  • Application Software 25%
  • Design 25%
  6 Scopus citations

• Infrared laser-induced fast thermal gradient affects the excitability of primary hippocampal neurons

  Tolstykh, G. P., Ibey, B. L., Sedelnikova, A. V., Valdez, C. M., Cantu, J. C. & Echchgadda, I., 2020, Optical Interactions with Tissue and Cells XXXI. Ibey, B. L. & Linz, N. (eds.). SPIE, 112380Z. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11238).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Excitability 100%
  • Neuron 100%
  • Cell Membrane 66%
  • Eicosanoid Receptor 33%
  • Action Potential 33%
  2 Scopus citations

• Microbubble-assisted preconcentration and ultrasensitive detection of biomolecules using plasmonic chiral metamaterials

  Liu, Y., Wu, Z., Montellano, R., Sharma, K. & Zheng, Y., 2020, CLEO: Applications and Technology, CLEO_AT 2020. Optica Publishing Group (formerly OSA), ATh4K.5. (Optics InfoBase Conference Papers; vol. Part F181-CLEO-AT 2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Preconcentration 100%
  • Metamaterials 100%
  • Concentration 50%
  • Time 50%
  • L-Glucose 50%

• Microbubble-Assisted Preconcentration and Ultrasensitive Detection of Biomolecules using Plasmonic Chiral Metamaterials

  Liu, Y., Wu, Z., Montellano, R., Sharma, K. & Zheng, Y., May 2020, 2020 Conference on Lasers and Electro-Optics, CLEO 2020 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 9193338. (Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-LEOS; vol. 2020-May).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Preconcentration 100%
  • Metamaterials 100%
  • Concentration 50%
  • Time 50%
  • L-Glucose 50%

• Mitigating complications caused by intravenous therapy: The IV patency monitoring device

  Portillo, D. J., Copeland, G., Vu, B. H., Navarro, O., Pineda, G., Seifi, S., Lyle Hood, R., Kaur, S., Das, N. A., DeArmond, D. T. & Calhoon, J. H., 2020, Frontiers in Biomedical Devices, BIOMED - 2020 Design of Medical Devices Conference, DMD 2020. American Society of Mechanical Engineers (ASME), (Frontiers in Biomedical Devices, BIOMED - 2020 Design of Medical Devices Conference, DMD 2020).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Intravenous Drug Administration 100%
  • Intravenous Therapy 80%
  • Complication 60%
  • Obstetric Delivery 60%
  • Blood Flow 40%
  2 Scopus citations

• Near real time EHR data utilization in a clinical study

  Penning, M. L., Blach, C., Walden, A., Wang, P., Donovan, K. M., Garza, M. Y., Wang, Z., Frund, J., Syed, S., Syed, M., Del Fiol, G., Newby, L. K., Pieper, C. & Zozus, M., Jun 16 2020, Digital Personalized Health and Medicine - Proceedings of MIE 2020. Pape-Haugaard, L. B., Lovis, C., Madsen, I. C., Weber, P., Nielsen, P. H. & Scott, P. (eds.). IOS Press, p. 337-341 5 p. (Studies in Health Technology and Informatics; vol. 270).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Electronics 100%
  • Data Record 80%
  • Electronic Health Record 80%
  • Clinical Study 40%
  • Case Study 20%
  3 Scopus citations

• Prostate cancer epithelial mesenchymal transition by TGF-β1 exposure monitored with a photonic crystal biosensor

  Cadena, M., Deluna, F., Baryeh, K., Sun, L. Z. & Ye, J. Y., 2020, Label-Free Biomedical Imaging and Sensing (LBIS) 2020. Shaked, N. T. & Hayden, O. (eds.). SPIE, 1125126. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11251).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Prostate Cancer 100%
  • Mesenchymal-Epithelial Transition 100%
  • Cancer Cell 83%
  • Refraction Index 66%
  • Refractivity 66%

• Rules based data quality assessment on claims database

  Gadde, M. A., Wang, Z., Zozus, M., Talburt, J. B. & Greer, M. L., 2020, THE IMPORTANCE OF HEALTH INFORMATICS IN PUBLIC HEALTH DURING A PANDEMIC. Mantas, J., Hasman, A., Househ, M. S., Gallos, P. & Zoulias, E. (eds.). IOS Press, p. 350-353 4 p. (Studies in Health Technology and Informatics; vol. 272).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Electronics 100%
  • Electronic Health Record 100%
  • Medicaid 100%
  • Data Record 66%
  • Data Quality Assessment 66%
  1 Scopus citations

• The prediction of diabetes development: A machine learning framework

  Islam, M. S., Qaraqe, M. K., Abbas, H. T., Erraguntla, M. & Abdul-Ghani, M., Oct 27 2020, 2020 IEEE 5th Middle East and Africa Conference on Biomedical Engineering, MECBME 2020. IEEE Computer Society, 09292043. (Middle East Conference on Biomedical Engineering, MECBME; vol. 2020-October).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Learning Framework 100%
  • Machine Learning 100%
  • Term Prediction 100%
  • Prediction Accuracy 50%
  • Diagnostics 50%
  3 Scopus citations
• 2019

  Cellular refractive index comparison of various prostate cancer and noncancerous cell lines via photonic-crystal biosensor

  Deluna, F., Cadena, M., Wang, B., Sun, L. Z. & Ye, J. Y., 2019, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XVII. Leary, J. F., Tarnok, A. & Farkas, D. L. (eds.). SPIE, 108810K. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10881).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Prostate Cancer 100%
  • Bioinstrumentation 83%
  • Cells 50%
  • Refractivity 50%
  • Detection 50%
  2 Scopus citations

• Integrating quantitative imaging and computational modeling to predict the spatiotemporal distribution of ¹⁸⁶Re nanoliposomes for recurrent glioblastoma treatment

  Woodall, R. T., Hormuth, D. A., Abdelmalik, M. R. A., Wu, C., Feng, X., Phillips, W. T., Bao, A., Hughes, T. J. R., Brenner, A. J. & Yankeelov, T. E., 2019, Medical Imaging 2019: Physics of Medical Imaging. Schmidt, T. G., Chen, G.-H. & Bosmans, H. (eds.). SPIE, 109483M. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10948).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Radiation 100%
  • Single-Photon Emission Computed Tomography 75%
  • Rhenium 186 75%
  • Neoplasm 50%
  • Obstetric Delivery 50%
  2 Scopus citations

• Predicting diabetes in healthy population through machine learning

  Abbas, H., Alic, L., Rios, M., Abdul-Ghani, M. & Qaraqe, K., Jun 2019, Proceedings - 2019 IEEE 32nd International Symposium on Computer-Based Medical Systems, CBMS 2019. Institute of Electrical and Electronics Engineers Inc., p. 567-570 4 p. 8787404. (Proceedings - IEEE Symposium on Computer-Based Medical Systems; vol. 2019-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Machine Learning 100%
  • Prediction Model 50%
  • Support Vector Machine 50%
  • Fold Cross Validation 50%
  • Future Development 50%
  32 Scopus citations
• 2018

  Environmental House Calls (EHC): Procedures and methods in a study to identify triggers for chemical intolerance

  Perales, R., Rincon, R., Palmer, R. F. & Miller, C. S., 2018, 15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018. International Society of Indoor Air Quality and Climate, (15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Procedures 100%
  • Home Visiting 66%
  • House Call 66%
  • Assessment 66%
  • Pilot Study 33%

• Environmental House Calls (EHCs): Findings from the toxicant-induced loss of tolerance (TILT) research project

  Rincon, R., Palmer, R. F., Perales, R. & Miller, C. S., 2018, 15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018. International Society of Indoor Air Quality and Climate, (15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Houses 100%
  • Home Visiting 75%
  • House Call 75%
  • Loss 50%
  • Tolerance 50%

• Indoor air, chemical intolerance, and Toxicant-Induced Loss of Tolerance (TILT)

  Miller, C. S., Palmer, R., Perales, R. & Rincon, R., 2018, 15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018. International Society of Indoor Air Quality and Climate, (15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Researcher 100%
  • Physician 100%
  • Researchers 100%
  • Disease Process 50%
  • Allergy 50%

• In-vivo fluorescence detection of breast cancer growth factor receptors by fiber-optic probe

  Bustamante, G., Wang, B., Deluna, F., Sun, L. & Ye, J. Y., 2018, Optical Biopsy XVI: Toward Real-Time Spectroscopic Imaging and Diagnosis. Alfano, R. R. & Demos, S. G. (eds.). SPIE, 104890E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10489).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Epidermal Growth Factor 100%
  • Probe 75%
  • Neoplasm 58%
  • Epidermal Growth Factor Receptor 50%
  • Fluorescence 33%

• Label-free in vitro prostate cancer cell detection via photonic-crystal biosensor

  Deluna, F., Ding, X., Sagredo, I., Bustamante, G., Sun, L. Z. & Ye, J. Y., 2018, Biophysics, Biology and Biophotonics III: The Crossroads. Wax, A. & Backman, V. (eds.). SPIE, 105040D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10504).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Cells 100%
  • Prostate Cancer 85%
  • Cancer Cell 57%
  • Refraction Index 42%
  • Crystal 42%
  3 Scopus citations

• Quantitative image-based phosphorus-31 MR spectroscopy for evaluating age-based differences in skeletal muscle metabolites

  Deng, S., Ripley, E. M., Vasquez, J. A., Tripathy, D., Defronzo, R. A. & Clarke, G. D., 2018, Medical Imaging 2018: Physics of Medical Imaging. Schmidt, T. G., Chen, G.-H. & Lo, J. Y. (eds.). SPIE, 105732T. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10573).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Creatine Phosphate 100%
  • Measurement 75%
  • Phantom 75%
  • Phosphorus Nuclear Magnetic Resonance 75%
  • Adenosine Triphosphate 50%
  2 Scopus citations

• Validated clinical and epidemiological approaches for assessing chemical intolerance: The QEESI and BREESI

  Palmer, R. F., Perales, R., Rincon, R., Miller, C. S. & Grimes, C., 2018, 15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018. International Society of Indoor Air Quality and Climate, (15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Environmental Exposure 100%
  • Diseases 16%
  • Health Care 16%
  • Researcher 16%
• 2017

  A primary morphological classifier for skin lesion images

  Macatangay, J. M. A., Ruiz, C. R. & Usatine, R. P., 2017, Full Papers Proceedings. Bourke, P. & Skala, V. (eds.). May ed. University of West Bohemia, Vol. 2701. p. 55-64 10 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Morphology 100%
  • Skin Defect 80%
  • Dermatosis 40%
  • Classification 40%
  • Decision Tree 40%
  1 Scopus citations

• Evaluation of a novel label-free photonic-crystal biosensor imaging system for the detection of prostate cancer cells

  DeLuna, F., Ding, X. F., Sun, L. & Ye, J. Y., 2017, Imaging, Manipulation, and Analysis of Biomolecules, Cells, and Tissues XV. Farkas, D. L., Nicolau, D. V. & Leif, R. C. (eds.). SPIE, 100681H. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10068).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Prostate Cancer 100%
  • Detection 75%
  • Bioinstrumentation 62%
  • Refractivity 50%
  • Refraction Index 50%
  7 Scopus citations

• How to teach health it evaluation: Recommendations for health IT evaluation courses

  Ammenwerth, E., De Keizer, N., Brender Mcnair, J., Craven, C. K., Eisenstein, E., Georgiou, A., Khairat, S., Magrabi, F., Nykänen, P., Otero, P., Rigby, M., Scott, P. & Weir, C., 2017, German Medical Data Sciences: Visions and Bridges - Proceedings of the 62nd Annual Meeting of the German Association of Medical Informatics, Biometry and Epidemiology (gmds e.V.), GMDS 2017. Rohrig, R., Sax, U., Timmer, A. & Binder, H. (eds.). IOS Press, p. 3-7 5 p. (Studies in Health Technology and Informatics; vol. 243).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Health 100%
  • Evaluation 77%
  • Evaluation Study 44%
  • Recommendation 33%
  • Course Evaluation 33%
  3 Scopus citations

• ThIEF: Finding genome-wide trajectories of epigenetics marks

  Polishko, A., Hasan, M. A., Pan, W., Bunnik, E. M., Le Roch, K. & Lonardi, S., Aug 1 2017, 17th International Workshop on Algorithms in Bioinformatics, WABI 2017. Reinert, K. & Schwartz, R. (eds.). Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 19. (Leibniz International Proceedings in Informatics, LIPIcs; vol. 88).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nucleosome 100%
  • Time 50%
  • Histone 37%
  • Position 25%
  • Epigenetics 25%

• Using Prevalence Patterns to Discover Un-mapped Flowsheet Data in an Electronic Health Record Data Warehouse

  Bokov, A. F., Bos, A. B., Manuel, L. S., Tirado-Ramos, A., Kittrell, P., Jackson, C. & Olin, G. P., Nov 10 2017, Proceedings - 2017 IEEE 30th International Symposium on Computer-Based Medical Systems, CBMS 2017. Bamidis, P. D., Konstantinidis, S. T. & Rodrigues, P. P. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 324-327 4 p. 8104211. (Proceedings - IEEE Symposium on Computer-Based Medical Systems; vol. 2017-June).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Flowsheets 100%
  • Health 75%
  • Datum 50%
  • Patient 50%
  • Data Warehouse 50%
• 2016

  Collapsed variational Bayesian inference of the author-topic model: Application to large-scale coordinate-based meta-analysis

  Ngo, G. H., Eickhoff, S. B., Fox, P. T. & Yeo, B. T. T., Aug 24 2016, PRNI 2016 - 6th International Workshop on Pattern Recognition in Neuroimaging. Institute of Electrical and Electronics Engineers Inc., 7552332. (PRNI 2016 - 6th International Workshop on Pattern Recognition in Neuroimaging).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Algorithms 100%
  • Parameter Estimate 20%
  • Generalization 20%
  • Brain Activation 20%
  • Cognitive Component 20%
  3 Scopus citations

• Seizure onset zone localization from many invasive EEG channels using directed functional connectivity

  Van Mierlo, P., Coito, A., Vulliémoz, S. & Lie, O., Nov 28 2016, 2016 24th European Signal Processing Conference, EUSIPCO 2016. European Signal Processing Conference, EUSIPCO, p. 255-259 5 p. 7760249. (European Signal Processing Conference; vol. 2016-November).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Seizure 100%
  • Electroencephalography 57%
  • Functional Connectivity 42%
  • Ictal 14%
  6 Scopus citations

• Vitamin D in Prostate Cancer

  Ahn, J., Park, S., Zuniga, B., Bera, A., Song, C. S. & Chatterjee, B., 2016, Vitamin D Hormone, 2016. Litwack, G. (ed.). Academic Press Inc., p. 321-355 35 p. (Vitamins and Hormones; vol. 100).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Androgen 100%
  • Vitamin D 100%
  • Prostate Cancer 85%
  • Calcitriol 57%
  • Androgen Receptor 42%
  24 Scopus citations
• 2015

  Haptics-enabled surgical training system with guidance using deep learning

  Biglari, E., Feng, M., Quarles, J., Sako, E., Calhoon, J., Rodriguez, R. & Feng, Y., 2015, Universal Access in Human-Computer Interaction: Access to Learning, Health and Well-Being - 9th International Conference, UAHCI 2015 Held as Part of HCI International 2015, Proceedings. Stephanidis, C., Antona, M. & Stephanidis, C. (eds.). Springer Verlag, p. 267-278 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 9177).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Procedures 100%
  • Deep Learning 100%
  • Surgical Training 66%
  • Training System 66%
  • Experienced Surgeon 66%
  1 Scopus citations

• Hybrid feature selection methods for online biomedical publication classification

  Ma, L., Zhang, Y., Sunderraman, R., Fox, P. T., Laird, A. R., Turner, J. A. & Turner, M. D., Oct 16 2015, 2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2015. Institute of Electrical and Electronics Engineers Inc., 7300320. (2015 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Feature Selection 100%
  • Classification 75%
  • Text Mining 50%
  • Feature Space 50%
  • Training Data 25%
  3 Scopus citations

• Model-based and context-specific background correction and differential methylation testing for MBDCap-seq

  Liu, Y., Wilson, D., Leach, R. J. & Chen, Y., Dec 16 2015, Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015. Schapranow, L. M., Zhou, J., Hu, X. T., Ma, B., Rajasekaran, S., Miyano, S., Yoo, I., Pierce, B., Shehu, A., Gombar, V. K., Chen, B., Pai, V. & Huan, J. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 214-219 6 p. 7359683. (Proceedings - 2015 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Promoter Region 100%
  • DNA Methylation 100%
  • Methylation 100%
  • Sample 50%
  • Nested Gene 25%
  1 Scopus citations

• Online biomedical publication classification using Multi-Instance Multi-Label algorithms with feature reduction

  Ren, D., Ma, L., Zhang, Y., Sunderraman, R., Fox, P. T., Laird, A. R., Turner, J. A. & Turner, M. D., Sep 11 2015, Proceedings of 2015 IEEE 14th International Conference on Cognitive Informatics and Cognitive Computing, ICCI*CC 2015. Chen, P., Zadeh, L. A., Ge, N., Wang, Y., Tao, X., Lu, J., Howard, N. & Zhang, B. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 234-241 8 p. 7259391. (Proceedings of 2015 IEEE 14th International Conference on Cognitive Informatics and Cognitive Computing, ICCI*CC 2015).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Classification 100%
  • Text Classification 75%
  • Algorithms 50%
  • Feature Reduction 50%
  • Keywords 50%
  5 Scopus citations

• Opto-acoustic image fusion technology for diagnostic breast imaging in a feasibility study

  Zalev, J., Clingman, B., Herzog, D., Miller, T., Ulissey, M., Stavros, A. T., Oraevsky, A., Lavin, P., Kist, K., Dornbluth, N. C. & Otto, P., 2015, Medical Imaging 2015: Ultrasonic Imaging and Tomography. Duric, N. & Bosch, J. G. (eds.). SPIE, 941909. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9419).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Diagnosis 100%
  • Breast Tumor 100%
  • Malignant Neoplasm 66%
  • Breast Imaging 66%
  • Imagery 33%
  14 Scopus citations

• Review of research on knowledge transfer in care transitions: Trust-enhancing principles for information systems design

  Lim, S. Y., Jarvenpaa, S. L. & Lanham, H. J., Mar 26 2015, Proceedings of the 48th Annual Hawaii International Conference on System Sciences, HICSS 2015. Bui, T. X. & Sprague, R. H. (eds.). IEEE Computer Society, p. 3148-3157 10 p. 7070195. (Proceedings of the Annual Hawaii International Conference on System Sciences; vol. 2015-March).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Transitions 100%
  • Transitional Care 100%
  • Knowledge Transfer 80%
  • Information Systems 60%
  • Information System 60%
  1 Scopus citations
• 2014

  Combining Meta- and mega-analytic approaches for multi-site diffusion imaging based genetic studies: From the enigma-DTI working group

  Jahanshad, N., Kochunov, P., Nichols, T. E., Sprooten, E., Mandl, R. C., Almasy, L. A., Brouwer, R. M., Curran, J. E., De Zubicaray, G. I., Dimitrova, R., Fox, P. T., Hong, L. E., Landman, B. A., Lemaitre, H., Lopez, L., Martin, N. G., McMahon, K. L., Mitchell, B. D., Olvera, R. L. & Peterson, C. P. & 17 others, Sussmann, J. E., Toga, A. W., Wardlaw, J. M., Wright, M. J., Wright, S. N., Bastin, M. E., McIntosh, A. M., Boomsma, D. I., Kahn, R. S., Den Braber, A., Deary, I. J., Pol, H. E. H., Williamson, D. E., Blangero, J. C., Van't Ent, D., Glahn, D. C. & Thompson, P. M., Jul 29 2014, 2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014. Institute of Electrical and Electronics Engineers Inc., p. 1234-1238 5 p. 6868099. (2014 IEEE 11th International Symposium on Biomedical Imaging, ISBI 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Investigation 100%
  • Site 66%
  • Genetics 50%
  • Datum 50%
  • Meta-Analysis 33%
  2 Scopus citations

• Fiber optic fluorescence microscopy for functional brain imaging in awake, mobile mice

  Cha, J., Paukert, M., Bergles, D. E. & Kang, J. U., 2014, Optical Techniques in Neurosurgery, Neurophotonics, and Optogenetics. SPIE, 89282N. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 8928).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Fiber Optics 100%
  • Mouse 75%
  • Fluorescence 50%
  • Brain 50%
  • Probe 50%
  4 Scopus citations

• Intramyocellular lipid dependence on skeletal muscle fiber type and orientation characterized by diffusion tensor imaging and ¹H-MRS

  Valaparla, S. K., Gao, F., Abdul-Ghani, M. & Clarke, G. D., 2014, Medical Imaging 2014: Image Processing. SPIE, 90340S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9034).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Lipid 100%
  • Diffusion Tensor Imaging 40%
  • Chemical Shift 30%
  • Normal Human 10%
  • Skeletal Muscle 10%

• Multisensory interface for 5D stem cell image volumes

  Koerner, M., Wait, E., Winter, M., Bjornsson, C., Kokovay, E., Wang, Y., Goderie, S. K., Temple, S. & Cohen, A. R., Nov 2 2014, 2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014. Institute of Electrical and Electronics Engineers Inc., p. 1178-1181 4 p. 6943806. (2014 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  Open Access

  • Big Data 100%
  1 Scopus citations

• Opto-acoustic breast imaging with co-registered ultrasound

  Zalev, J., Clingman, B., Herzog, D., Miller, T., Stavros, A. T., Oraevsky, A., Kist, K., Dornbluth, N. C. & Otto, P., 2014, Medical Imaging 2014: Biomedical Applications in Molecular, Structural, and Functional Imaging. SPIE, 90381J. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9038).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Diagnosis 100%
  • Breast Tumor 75%
  • Neoplasm 50%
  • Morphology 50%
  • Malignant Neoplasm 50%
  7 Scopus citations

• Transcriptomic analysis by RNA-Seq and gene enrichment analysis

  Nixon, S. E., González-Peña, D., Lawson, M. A., McCusker, R. H., O'Connor, J. C., Dantzer, R., Kelley, K. W. & Rodriguez-Zas, S. L., 2014, Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014. International Society for Computers and Their Applications, p. 27-31 5 p. (Proceedings of the 6th International Conference on Bioinformatics and Computational Biology, BICOB 2014).

  Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  • Nested Gene 100%
  • Gene 100%
  • RNA-Seq 60%
  • Gene Expression Profiling 40%
  • Sample 40%