Joe R & Teresa Lozano Long School of Medicine

Search results

• Luteolin inhibits Musashi1 binding to RNA and disrupts cancer phenotypes in glioblastoma cells

  Yi, C. (Contributor), Li, G. (Contributor), Ivanov, D. N. (Creator), Wang, Z. (Contributor), Velasco, M. X. (Contributor), Hernández, G. (Contributor), Kaundal, S. (Contributor), Villarreal, J. (Creator), Gupta, Y. K. (Creator), Qiao, M. (Creator), Hubert, C. G. (Creator), Hart, M. J. (Creator) & Penalva, L. O. F. (Contributor), Taylor & Francis, 2018

  DOI: 10.6084/m9.figshare.7357895.v1, https://tandf.figshare.com/articles/Luteolin_inhibits_Musashi1_binding_to_RNA_and_disrupts_cancer_phenotypes_in_glioblastoma_cells/7357895/1

  Dataset

• CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

  Mostavi, M. (Creator), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor) & Huang, Y. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5422418.v1, https://springernature.figshare.com/collections/CancerSiamese_one-shot_learning_for_predicting_primary_and_metastatic_tumor_types_unseen_during_model_training/5422418/1

  Dataset

• MBDDiff: an R package designed specifically for processing MBDcap-seq datasets

  Liu, Y. (Contributor), Wilson, D. (Creator), Leach, R. J. (Creator) & Chen, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3634943.v1, https://figshare.com/collections/MBDDiff_an_R_package_designed_specifically_for_processing_MBDcap-seq_datasets/3634943/1

  Dataset

• Additional file 5 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

  Zhou, Y. (Creator), Cheng, X. (Creator), Yang, Y. (Creator), Li, T. (Creator), Li, J. (Creator), Huang, T.H.-M. (Creator), Wang, J. (Creator), Lin, S. (Creator) & Jin, V. X. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12799471.v1, https://springernature.figshare.com/articles/dataset/Additional_file_5_of_Modeling_and_analysis_of_Hi-C_data_by_HiSIF_identifies_characteristic_promoter-distal_loops/12799471/1

  Dataset

• Transcription profiling of human stage 1,2 normal and tumor kidney cancer

  Gumz, M. L. (Contributor), Zou, H. (Contributor), Kreinest, P. A. (Contributor), Childs, A. C. (Contributor), Belmonte, L. S. (Contributor), LeGrand, S. N. (Contributor), Wu, K. J. (Contributor), Luxon, B. A. (Contributor), Sinha, M. (Contributor), Parker, A. S. (Contributor), Sun, L.-Z. (Contributor), Ahlquist, D. A. (Contributor), Wood, C. G. (Contributor) & Copland, J. A. (Contributor), ArrayExpress, 2008

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-6344

  Dataset

• Ocimum gratissimum aqueous extract attenuates inflammation in lipopolysaccharide-induced acute lung injury in mice

  Zhang, Y. (Contributor), Li, X. (Contributor), Grailer, J. J. (Contributor), Wang, N. (Contributor), Wang, M. (Contributor), Yao, J. (Contributor), Zhong, R. (Contributor), Gao, G. F. (Contributor), Ward, P. A. (Contributor), Tan, D.-X. (Contributor) & Li, X. (Contributor), Science Data Bank, May 29 2024

  DOI: 10.57760/sciencedb.09036, https://www.scidb.cn/en/detail?dataSetId=1dadcf2095a84adfa50225e90f587819

  Dataset

• Additional file 11 of Effects of mesenchymal stromal cell-conditioned media on measures of lung structure and function: a systematic review and meta-analysis of preclinical studies

  Moreira, A. (Creator), Naqvi, R. (Contributor), Hall, K. (Creator), Emukah, C. (Contributor), Martinez, J. (Creator), Moreira, A. (Creator), Dittmar, E. (Creator), Zoretic, S. (Creator), Evans, M. (Creator), Moses, D. (Contributor) & Mustafa, S. (Contributor), Figshare, 2020

  DOI: 10.6084/m9.figshare.12960666, https://springernature.figshare.com/articles/dataset/Additional_file_11_of_Effects_of_mesenchymal_stromal_cell-conditioned_media_on_measures_of_lung_structure_and_function_a_systematic_review_and_meta-analysis_of_preclinical_studies/12960666

  Dataset

• Additional file 18: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288354.v1, https://springernature.figshare.com/articles/Additional_file_18_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288354/1

  Dataset

• Additional file 23: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288372, https://springernature.figshare.com/articles/Additional_file_23_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288372

  Dataset

• Additional file 6: of Probabilistic modeling of personalized drug combinations from integrated chemical screen and molecular data in sarcoma

  Berlow, N. E. (Creator), Rikhi, R. (Contributor), Geltzeiler, M. (Creator), Abraham, J. (Contributor), Svalina, M. N. (Creator), Davis, L. E. (Creator), Wise, E. (Creator), Mancini, M. (Creator), Noujaim, J. (Creator), Mansoor, A. (Contributor), Quist, M. J. (Creator), Matlock, K. L. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Doung, Y. C. (Creator), Thway, K. (Contributor), Tsukahara, T. (Contributor), Nishio, J. (Creator), Huang, E. T. (Creator), Airhart, S. (Creator), Bult, C. J. (Creator), Gandour-Edwards, R. (Creator), Maki, R. G. (Creator), Jones, R. L. (Creator), Michalek, J. E. (Creator), Milovancev, M. (Creator), Ghosh, S. (Contributor), Pal, R. (Contributor) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8288429, https://springernature.figshare.com/articles/Additional_file_6_of_Probabilistic_modeling_of_personalized_drug_combinations_from_integrated_chemical_screen_and_molecular_data_in_sarcoma/8288429

  Dataset

• 3QQD : Human SOD1 H80R variant, P212121 crystal form

  Seetharaman, S. V. (Contributor), Winkler, D. D. (Contributor), Taylor, A. B. (Contributor), Cao, X. (Contributor), Whitson, L. J. (Contributor), Doucette, P. A. (Contributor), Valentine, J. S. (Contributor), Schirf, V. (Contributor), Demeler, B. (Contributor), Carroll, M. C. (Contributor), Culotta, V. C. (Contributor) & Hart, P. J. (Contributor), RCSB-PDB, 2011

  DOI: 10.2210/pdb3qqd/pdb, https://www.rcsb.org/structure/3QQD

  Dataset

• Structure of STENOFOLIA Protein HD domain bound with DNA

  Pathak, P. K. (Contributor), Zhang, F. (Contributor), Peng, S. (Contributor), Niu, L. (Contributor), Chaturvedi, J. (Contributor), Elliott, J. (Contributor), Xiang, Y. (Contributor), Tadege, M. (Contributor) & Deng, J. (Contributor), Protein Data Bank (PDB), Aug 11 2021

  DOI: 10.2210/pdb6WIG/pdb, https://www.wwpdb.org/pdb?id=pdb_00006wig

  Dataset

• Rat PKC C2 domain bound to CD

  Morales, K. A. (Contributor), Yang, Y. (Contributor), Long, Z. (Contributor), Li, P. (Contributor), Taylor, A. B. (Contributor), Hart, P. J. (Contributor) & Igumenova, T. I. (Contributor), Protein Data Bank (PDB), Aug 28 2013

  DOI: 10.2210/pdb4L1L/pdb, https://www.wwpdb.org/pdb?id=pdb_00004l1l

  Dataset

• Vibrio Vulnificus Adenine Riboswitch Aptamer Domain, Synthesized by Position-selective Labeling of RNA (PLOR), in Complex with Adenine

  Liu, Y. (Contributor), Holmstrom, E. (Contributor), Zhang, J. (Contributor), Yu, P. (Contributor), Wang, J. (Contributor), Dyba, M. A. (Contributor), Chen, D. (Contributor), Ying, J. (Contributor), Lockett, S. (Contributor), Nesbitt, D. J. (Contributor), Ferré-D'Amaré, A. R. (Contributor), Sousa, R. (Contributor), Stagno, J. R. (Contributor), Wang, Y.-X. (Contributor) & Eisenstein, M. (Contributor), Protein Data Bank (PDB), May 6 2015

  DOI: 10.2210/pdb4XNR/pdb, https://www.wwpdb.org/pdb?id=pdb_00004xnr

  Dataset

• Structure of neuronal nitric oxide synthase R349A mutant heme domain in complex with 6-{{(3'S,4'R)-3'-[2"-(3'''-fluorophenethylamino)ethoxy]pyrrolidin-4'-yl}methyl}-4-methylpyridin-2-amine

  Ji, H. (Contributor), Delker, S. L. (Contributor), Li, H. (Contributor), Martásek, P. (Contributor), Roman, L. J. (Contributor), Poulos, T. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Nov 3 2010

  DOI: 10.2210/pdb3NLO/pdb, https://www.wwpdb.org/pdb?id=pdb_00003nlo

  Dataset

• HUMAN SOD1 G93A Metal-free Variant

  Galaleldeen, A. (Contributor), Strange, R. W. (Contributor), Whitson, L. J. (Contributor), Antonyuk, S. V. (Contributor), Narayana, N. (Contributor), Taylor, A. B. (Contributor), Schuermann, J. P. (Contributor), Holloway, S. P. (Contributor), Hasnain, S. S. (Contributor) & Hart, P. J. (Contributor), Protein Data Bank (PDB), Oct 13 2009

  DOI: 10.2210/pdb3GZP/pdb, https://www.wwpdb.org/pdb?id=pdb_00003gzp

  Dataset

• M. jannaschii Nep1

  Taylor, A. B. (Contributor), Meyer, B. (Contributor), Leal, B. Z. (Contributor), Kötter, P. (Contributor), Schirf, V. (Contributor), Demeler, B. (Contributor), Hart, P. J. (Contributor), Entian, K.-D. (Contributor) & Wöhnert, J. (Contributor), Protein Data Bank (PDB), Feb 5 2008

  DOI: 10.2210/pdb3BBE/pdb, https://www.wwpdb.org/pdb?id=pdb_00003bbe

  Dataset

• Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(((5-(((3-fluorophenethyl)amino)methyl)pyridin-3-yl)oxy)methyl)-4-methylpyridin-2-amine

  Jing, Q. (Contributor), Li, H. (Contributor), Fang, J. (Contributor), Roman, L. J. (Contributor), Martásek, P. (Contributor), Poulos, T. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Aug 7 2013

  DOI: 10.2210/pdb4JSJ/pdb, https://www.wwpdb.org/pdb?id=pdb_00004jsj

  Dataset

• Additional file 4: of Socioeconomic status and stroke incidence, prevalence, mortality, and worldwide burden: an ecological analysis from the Global Burden of Disease Study 2017

  Avan, A. (Contributor), Digaleh, H. (Creator), Di Napoli, M. (Contributor), Stranges, S. (Creator), Behrouz, R. (Creator), Shojaeianbabaei, G. (Creator), Amiri, A. (Creator), Tabrizi, R. (Creator), Mokhber, N. (Creator), Spence, J. D. (Contributor) & Azarpazhooh, M. R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.10033820, https://springernature.figshare.com/articles/Additional_file_4_of_Socioeconomic_status_and_stroke_incidence_prevalence_mortality_and_worldwide_burden_an_ecological_analysis_from_the_Global_Burden_of_Disease_Study_2017/10033820

  Dataset

• MOESM1 of Mesenchymal stromal cell conditioned media for lung disease: a systematic review and meta-analysis of preclinical studies

  Emukah, C. (Contributor), Dittmar, E. (Creator), Naqvi, R. (Contributor), Martinez, J. (Creator), Corral, A. (Creator), Moreira, A. (Creator) & Moreira, A. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.10094255, https://springernature.figshare.com/articles/MOESM1_of_Mesenchymal_stromal_cell_conditioned_media_for_lung_disease_a_systematic_review_and_meta-analysis_of_preclinical_studies/10094255

  Dataset

• Trophoblast differentiation, invasion and hormone secretion in a three-dimensional in vitro implantation model with rhesus monkey embryos

  Chang, T. A. (Creator), Bondarenko, G. I. (Creator), Gerami-Naini, B. (Creator), Drenzek, J. G. (Creator), Durning, M. (Creator), Garthwaite, M. A. (Creator), Schmidt, J. K. (Creator) & Golos, T. G. (Creator), Figshare, 2018

  DOI: 10.6084/m9.figshare.c.4034512.v1, https://springernature.figshare.com/collections/Trophoblast_differentiation_invasion_and_hormone_secretion_in_a_three-dimensional_in_vitro_implantation_model_with_rhesus_monkey_embryos/4034512/1

  Dataset

• Crystal structure of IlvN.Val-1b

  Bansal, A. (Contributor), Karanth, N. M. (Contributor), Demeler, B. (Contributor), Schindelin, H. (Contributor), Sarma, S. P. (Contributor) & Mitra, A. (Contributor), Protein Data Bank (PDB), Sep 19 2018

  DOI: 10.2210/pdb5YPW/pdb, https://www.wwpdb.org/pdb?id=pdb_00005ypw

  Dataset

• Structure of rat neuronal nitric oxide synthase heme domain in complex with 7-(((3-(Dimethylamino)benzyl)amino)methyl)quinolin-2-amine

  Pensa, A. V. (Contributor), Cinelli, M. A. (Contributor), Li, H. (Contributor), Chreifi, G. (Contributor), Mukherjee, P. (Contributor), Roman, L. J. (Contributor), Martásek, P. (Contributor), Poulos, T. L. (Contributor) & Silverman, R. B. (Contributor), Protein Data Bank (PDB), Aug 16 2017

  DOI: 10.2210/pdb5VUJ/pdb, https://www.wwpdb.org/pdb?id=pdb_00005vuj

  Dataset

• Matrix metalloproteinase-13 complexed with selective inhibitor compound (R)-17a

  Choi, J. Y. (Contributor), Fuerst, R. (Contributor), Knapinska, A. M. (Contributor), Taylor, A. B. (Contributor), Smith, L. (Contributor), Cao, X. (Contributor), Hart, P. J. (Contributor), Fields, G. B. (Contributor) & Roush, W. R. (Contributor), Protein Data Bank (PDB), Jul 12 2017

  DOI: 10.2210/pdb5UWM/pdb, https://www.wwpdb.org/pdb?id=pdb_00005uwm

  Dataset

• BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells

  Zhang, X. (Creator), Wang, Y. (Creator), Chiang, H.-C. (Creator), Hsieh, Y.-P. (Creator), Lu, C. (Creator), Park, B. H. (Creator), Jatoi, I. (Creator), Jin, V. X. (Creator), Hu, Y. (Creator) & Li, R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4710803.v1, https://springernature.figshare.com/collections/BRCA1_mutations_attenuate_super-enhancer_function_and_chromatin_looping_in_haploinsufficient_human_breast_epithelial_cells/4710803/1

  Dataset