Research output per year
Research output per year
- 50 results
Search results
-
2022
2-Hydroxyglutarate destabilizes chromatin regulatory landscape and lineage fidelity to promote cellular heterogeneity
Kusi, M., Zand, M., Lin, L. L., Chen, M., Lopez, A., Lin, C. L., Wang, C. M., Lucio, N. D., Kirma, N. B., Ruan, J., Huang, T. H. M. & Mitsuya, K., Jan 11 2022, In: Cell Reports. 38, 2, 110220.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction
Adnan, N., Zand, M., Huang, T. H. M. & Ruan, J., 2022, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19, 3, p. 1344-1353 10 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
The proteomic landscape of ovarian cancer cells in response to melatonin
Cesário, R. C., Gaiotte, L. B., Cucielo, M. S., Silveira, H. S., Delazari dos Santos, L., de Campos Zuccari, D. A. P., Seiva, F. R. F., Reiter, R. J. & de Almeida Chuffa, L. G., Apr 1 2022, In: Life Sciences. 294, 120352.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2020
Comparative evaluation of network features for the prediction of breast cancer metastasis
Adnan, N., Liu, Z., Huang, T. H. M. & Ruan, J., Apr 3 2020, In: BMC Medical Genomics. 13, 40.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
2019
Adipokines deregulate cellular communication via epigenetic repression of gap junction loci in obese endometrial cancer
Polusani, S. R., Huang, Y. W., Huang, G., Chen, C. W., Wang, C. M., Lin, L. L., Osmulski, P., Lucio, N. D., Liu, L., Hsu, Y. T., Zhou, Y., Lin, C. L., Aguilera-Barrantes, I., Valente, P. T., Kost, E. R., Chen, C. L., Shim, E. Y., Lee, S. E., Ruan, J. & Gaczynska, M. E. & 7 others, , Jan 1 2019, In: Cancer Research. 79, 1, p. 196-208 13 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
A novel algorithm for network-based prediction of cancer recurrence
Ruan, J., Jahid, M. J., Gu, F., Lei, C., Huang, Y. W., Hsu, Y. T., Mutch, D. G., Chen, C. L., Kirma, N. B. & Huang, T. H. M., Jan 2019, In: Genomics. 111, 1, p. 17-23 7 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Spatial EGFR dynamics and metastatic phenotypes modulated by upregulated Ephb2 and Src pathways in advanced prostate cancer
Liu, Y. L., Horning, A. M., Lieberman, B., Kim, M., Lin, C. K., Hung, C. N., Chou, C. W., Wang, C. M., Lin, C. L., Kirma, N. B., Liss, M. A., Vasisht, R., Perillo, E. P., Blocher, K., Horng, H., Taverna, J. A., Ruan, J., Yankeelov, T. E., Dunn, A. K. & Huang, T. H. M. & 2 others, , Dec 2019, In: Cancers. 11, 12, 1910.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
2018
Intratumoral CD56bright natural killer cells are associated with improved survival in bladder cancer
Mukherjee, N., Ji, N., Hurez, V., Curiel, T. J., Montgomery, M. O., Braun, A. J., Nicolas, M., Aguilera, M., Kaushik, D., Liu, Q., Ruan, J., Kendrick, K. A. & Svatek, R. S., Nov 1 2018, In: Oncotarget. 9, 92, p. 36492-36502 11 p.Research output: Contribution to journal › Article › peer-review
48 Scopus citations -
2017
Alterations in the placental methylome with maternal obesity and evidence for metabolic regulation
Mitsuya, K., Parker, A. N., Liu, L., Ruan, J., Vissers, M. C. M. & Myatt, L., Oct 2017, In: PloS one. 12, 10, e0186115.Research output: Contribution to journal › Article › peer-review
Open Access54 Scopus citations -
2016
EpCAM-regulated transcription exerts influences on nanomechanical properties of endometrial cancer cells that promote epithelial-to-mesenchymal transition
Hsu, Y. T., Osmulski, P., Wang, Y., Huang, Y. W., Liu, L., Ruan, J., Jin, V. X., Kirma, N. B., Gaczynska, M. E. & Huang, T. H. M., Nov 1 2016, In: Cancer Research. 76, 21, p. 6171-6182 12 p.Research output: Contribution to journal › Article › peer-review
Open Access47 Scopus citations -
2014
A personalized committee classification approach to improving prediction of breast cancer metastasis
Jahid, M. J., Huang, T. H. & Ruan, J., Jul 1 2014, In: Bioinformatics. 30, 13, p. 1858-1866 9 p.Research output: Contribution to journal › Article › peer-review
33 Scopus citations -
2013
Fully automated protein complex prediction based on topological similarity and community structure
Lei, C., Tamim, S., Bishop, A. J. R. & Ruan, J., 2013, In: Proteome Science. 11, S9.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Regulation of adipose oestrogen output by mechanical stress
Ghosh, S., Ashcraft, K., Jahid, M. J., April, C., Ghajar, C. M., Ruan, J., Wang, H., Foster, M., Hughes, D. C., Ramirez, A. G., Huang, T., Fan, J. B., Hu, Y. & Li, R., 2013, In: Nature communications. 4, 1821.Research output: Contribution to journal › Article › peer-review
Open Access36 Scopus citations -
2011
Genomic analyses of the RNA-binding protein Hu antigen R (HuR) identify a complex network of target genes and novel characteristics of its binding sites
Uren, P. J., Burns, S. C., Ruan, J., Singh, K. K., Smith, A. D. & Penalva, L. O. F., Oct 28 2011, In: Journal of Biological Chemistry. 286, 43, p. 37063-37066 4 p.Research output: Contribution to journal › Article › peer-review
63 Scopus citations -
2010
Building and analyzing protein interactome networks by cross-species comparisons
Wiles, A. M., Doderer, M., Ruan, J., Gu, T. T., Ravi, D., Blackman, B. & Bishop, A. J. R., Mar 30 2010, In: BMC Systems Biology. 4, 36.Research output: Contribution to journal › Article › peer-review
50 Scopus citations -
2009
A network of conserved damage survival pathways revealed by a genomic RNAi screen
Ravi, D., Wiles, A. M., Bhavani, S., Ruan, J., Leder, P. & Bishop, A. J. R., Jun 2009, In: PLoS Genetics. 5, 6, e1000527.Research output: Contribution to journal › Article › peer-review
47 Scopus citations -
2004
Dehydroepiandrosterone Sulfotransferase Is a Target for Transcriptional Induction by the Vitamin D Receptor
Echchgadda, I., Song, C. S., Roy, A. K. & Chatterjee, B., Mar 2004, In: Molecular pharmacology. 65, 3, p. 720-729 10 p.Research output: Contribution to journal › Article › peer-review
148 Scopus citations -
Nuclear Factor-κB Activates Transcription of the Androgen Receptor Gene in Sertoli Cells Isolated from Testes of Adult Rats
Zhang, L., Charron, M., Wright, W. W., Chatterjee, B., Song, C. S., Roy, A. K. & Brown, T. R., Feb 2004, In: Endocrinology. 145, 2, p. 781-789 9 p.Research output: Contribution to journal › Article › peer-review
46 Scopus citations -
2003
Role of the promyelocytic leukemia body in the dynamic interaction between the androgen receptor and steroid receptor coactivator-1 in living cells
Rivera, O. J., Song, C. S., Centonze, V. E., Lechleiter, J. D., Chatterjee, B. & Roy, A. K., Jan 1 2003, In: Molecular Endocrinology. 17, 1, p. 128-140 13 p.Research output: Contribution to journal › Article › peer-review
28 Scopus citations -
2001
Androgen receptor: Structural domains and functional dynamics after ligand-receptor interaction
Roy, A. K., Tyagi, R. K., Song, C. S., Lavrovsky, Y., Ahn, S. C., Oh, T. S. & Chatterjee, B., 2001, In: Annals of the New York Academy of Sciences. 949, p. 44-57 14 p.Research output: Contribution to journal › Article › peer-review
108 Scopus citations -
Dehydroepiandrosterone Sulfotransferase Gene Induction by Bile Acid Activated Farnesoid X Receptor
Song, C. S., Echchgadda, I., Baek, B. S., Ahn, S. C., Oh, T., Roy, A. K. & Chatterjee, B., Nov 9 2001, In: Journal of Biological Chemistry. 276, 45, p. 42549-42556 8 p.Research output: Contribution to journal › Article › peer-review
179 Scopus citations -
2000
Age-dependent increase of heme oxygenase-1 gene expression in the liver mediated by NFκB
Lavrovsky, Y., Song, C. S., Chatterjee, B. & Roy, A. K., Feb 22 2000, In: Mechanisms of Ageing and Development. 114, 1, p. 49-60 12 p.Research output: Contribution to journal › Article › peer-review
75 Scopus citations -
Dynamics of intracellular movement and nucleocytoplasmic recycling of the ligand-activated androgen receptor in living cells
Tyagi, R. K., Lavrovsky, Y., Ahn, S. C., Song, C. S., Chatterjee, B. & Roy, A. K., 2000, In: Molecular Endocrinology. 14, 8, p. 1162-1174 13 p.Research output: Contribution to journal › Article › peer-review
Open Access263 Scopus citations -
1999
Negative regulation of the androgen receptor gene promoter by NFI and an adjacently located multiprotein-binding site
Song, C. S., Jung, M. H., Supakar, P. C., Chatterjee, B. & Roy, A. K., 1999, In: Molecular Endocrinology. 13, 9, p. 1487-1496 10 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Ribozyme-mediated cleavage of the estrogen receptor messenger RNA and inhibition of receptor function in target cells
Lavrovsky, Y., Tyagi, R. K., Chen, S., Song, C. S., Chatterjee, B. & Roy, A. K., 1999, In: Molecular Endocrinology. 13, 6, p. 925-934 10 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
1998
A rapid and reliable PCR-based assay for gene transmission and sex determination in newborn transgenic mice
Lavrovsky, Y., Song, C. S., Chatterjee, B. & Roy, A. K., Jul 1998, In: Transgenic Research. 7, 4, p. 319-320 2 p.Research output: Contribution to journal › Article › peer-review
18 Scopus citations -
Catalytic cleavage of the androgen receptor messenger RNA and functional inhibition of androgen receptor activity by a hammerhead ribozyme
Chen, S., Song, C. S., Lavrovsky, Y., Bi, B., Vellanoweth, R., Chatterjee, B. & Roy, A. K., 1998, In: Molecular Endocrinology. 12, 10, p. 1558-1566 9 p.Research output: Contribution to journal › Article › peer-review
Open Access40 Scopus citations -
Inhibition of androgen action by dehydroepiandrosterone sulfotransferase transfected in PC-3 prostate cancer cells
Chan, J., Song, C. S., Matusik, R. J., Chatterjee, B. & Roy, A. K., Feb 20 1998, In: Chemico-Biological Interactions. 109, 1-3, p. 267-278 12 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
Regulation of Androgen Action
Roy, A. K., Lavrovsky, Y., Song, C. S., Chen, S., Jung, M. H., Velu, N. K., Bi, B. Y. & Chatterjee, B., 1998, In: Vitamins and Hormones. 55, C, p. 309-332,332A,333-352Research output: Contribution to journal › Article › peer-review
201 Scopus citations -
1996
Targeted overexpression of androgen receptor with a liver-specific promoter in transgenic mice
Chatterjee, B., Song, C. S., Jung, M. H., Chen, S., Walter, C. A., Herbert, D. C., Weaker, F. J., Mancini, M. A. & Roy, A. K., Jan 23 1996, In: Proceedings of the National Academy of Sciences of the United States of America. 93, 2, p. 728-733 6 p.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
The evolutionary tangle of aging, sex, and reproduction and an experimental approach to its molecular dissection
Roy, A. K., Vellanoweth, R. L., Chen, S., Supakar, P. C., Jung, M. H., Song, C. S. & Chatterjee, B., 1996, In: Experimental Gerontology. 31, 1-2, p. 83-94 12 p.Research output: Contribution to journal › Article › peer-review
14 Scopus citations -
1995
Cloning and sequence analysis of a novel member of the single-stranded DNA binding protein family
Rikke, B. A., Vellanoweth, R. L., Her, S., Chatterjee, B. & Roy, A. K., Mar 14 1995, In: BBA - Gene Structure and Expression. 1261, 1, p. 143-146 4 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Molecular cloning and sequence analysis of the rat liver carnitine octanoyltransferase cDNA, its natural gene and the gene promoter
Choi, S. J., Oh, D. H., Song, C. S., Roy, A. K. & Chatterjee, B., Nov 7 1995, In: BBA - Gene Structure and Expression. 1264, 2, p. 215-222 8 p.Research output: Contribution to journal › Article › peer-review
29 Scopus citations -
Nuclear factor κB functions as a negative regulator for the rat androgen receptor gene and NF-κB activity increases during the age-dependent desensitization of the liver
Supakar, P. C., Jung, M. H., Song, C. S., Chatterjee, B. & Roy, A. K., Jan 13 1995, In: Journal of Biological Chemistry. 270, 2, p. 837-842 6 p.Research output: Contribution to journal › Article › peer-review
140 Scopus citations -
Regulation of Androgen Action by Receptor Gene Inhibition
SONG, C. S., JUNG, M. H., SUPAKAR, P. C., CHEN, S., VELLANOWETH, R. L., CHATTERJEE, B. & ROY, A. K., Jun 1995, In: Annals of the New York Academy of Sciences. 761, 1, p. 97-108 12 p.Research output: Contribution to journal › Article › peer-review
17 Scopus citations -
Tubular hypertrophy due to work load induced by furosemide is associated with increases of IGF-1 and IGFBP-1
Kobayashi, S., Clemmons, D. R., Nogami, H., Roy, A. K. & Venkatachalam, M. A., Mar 1995, In: Kidney international. 47, 3, p. 818-828 11 p.Research output: Contribution to journal › Article › peer-review
Open Access42 Scopus citations -
1994
Androgen and estrogen sulfotransferases of the rat liver: physiological function, molecular cloning, and in vitro expression
Chatterjee, B., Song, C. S., Kim, J. M. & Roy, A. K., Jun 1994, In: Chemico-Biological Interactions. 92, 1-3, p. 273-279 7 p.Research output: Contribution to journal › Article › peer-review
23 Scopus citations -
1993
A novel regulatory element associated with age-dependent expression of the rat androgen receptor gene
Supakar, P. C., Song, C. S., Jung, M. H., Slomczynska, M. A., Kim, J. M., Vellanoweth, R. L., Chatterjee, B. & Roy, A. K., Dec 15 1993, In: Journal of Biological Chemistry. 268, 35, p. 26400-26408 9 p.Research output: Contribution to journal › Article › peer-review
69 Scopus citations -
1992
Estrogen sulfotransferase of the rat liver: Complementary DNA cloning and age- and sex-specific regulation of messenger RNA
Demyan, W. F., Song, C. S., Kim, D. S., Her, S., Gallwitz, W., Rao, T. R., Slomczynska, M., Chatterjee, B. & Roy, A. K., Apr 1992, In: Molecular Endocrinology. 6, 4, p. 589-597 9 p.Research output: Contribution to journal › Article › peer-review
137 Scopus citations -
Spatio-temporal expression of estrogen sulfotransferase within the hepatic lobule of male rats: Implication of in situ estrogen inactivation in androgen action
Mancini, M. A., Song, C. S., Rao, T. R., Chatterjee, B. & Roy, A. K., Sep 1992, In: Endocrinology. 131, 3, p. 1541-1546 6 p.Research output: Contribution to journal › Article › peer-review
28 Scopus citations -
1991
Age-dependent reversal of the lobular distribution of androgen-inducible α(2u) globulin and androgen-repressible SMP-2 in rat liver
Mancini, M. A., Chatterjee, B. & Roy, A. K., 1991, In: Journal of Histochemistry and Cytochemistry. 39, 4, p. 401-405 5 p.Research output: Contribution to journal › Article › peer-review
13 Scopus citations -
Androgen receptor messenger ribonucleic acid (mRNA) in the rat liver: Changes in mRNA levels during maturation, aging, and calorie restriction
Song, C. S., Rao, T. R., Demyan, W. F., Mancini, M. A., Chatterjee, B. & Roy, A. K., Jan 1991, In: Endocrinology. 128, 1, p. 349-356 8 p.Research output: Contribution to journal › Article › peer-review
69 Scopus citations -
1990
Changes in hepatic androgen sensitivity and gene expression during aging
Chatterjee, B. & Roy, A. K., Nov 20 1990, In: Journal of Steroid Biochemistry and Molecular Biology. 37, 3, p. 437-445 9 p.Research output: Contribution to journal › Article › peer-review
16 Scopus citations -
Expression of the human inhibin α-subunit gene in preovulatory granulosa-theca cells
Burns, W. N., McGill, J. R., Roy, A. K. & Schenken, R. S., Jan 1990, In: American Journal of Obstetrics and Gynecology. 162, 1, p. 273-277 5 p.Research output: Contribution to journal › Article › peer-review
10 Scopus citations -
Structure and Regulation of the Senescence Marker Protein 2 Gene Promoter
Song, C. S., Kim, J. M., Roy, A. K. & Chatterjee, B., Jan 1 1990, In: Biochemistry. 29, 2, p. 542-551 10 p.Research output: Contribution to journal › Article › peer-review
36 Scopus citations -
The senescence marker protein (SMP-2) of the rat liver: purification, immunochemical characterization and age-dependent regulation
Chatterjee, B., Mancini, M. A. & Roy, A. K., May 16 1990, In: BBA - General Subjects. 1034, 2, p. 162-169 8 p.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
1989
Calorie restriction delays age-dependent loss in androgen responsiveness of the rat liver
Chatterjee, B., Fernandes, G., Yu, B. P., Song, C., Kim, J. M., Demyan, W. & Roy, A. K., 1989, In: FASEB Journal. 3, 2, p. 169-173 5 p.Research output: Contribution to journal › Article › peer-review
35 Scopus citations -
Loss of androgenic induction of α2u-globulin gene family in the liver of NIH black rats
Chatterjee, B., Demyan, W. F., Song, C. S., Garg, B. D. & Roy, A. K., Sep 1989, In: Endocrinology. 125, 3, p. 1385-1388 4 p.Research output: Contribution to journal › Article › peer-review
Open Access40 Scopus citations -
α(2u)-Globulin in modified sebaceous glands with pheromonal functions: localization of the protein and its mRNA in preputial, meibomian, and perianal glands
Mancini, M. A., Majumdar, D., Chatterjee, B. & Roy, A. K., 1989, In: Journal of Histochemistry and Cytochemistry. 37, 2, p. 149-157 9 p.Research output: Contribution to journal › Article › peer-review
Open Access52 Scopus citations -
1988
Cloning, Sequencing, and Regulation of Rat Liver Carnitine Octanoyltransferase: Transcriptional Stimulation of the Enzyme during Peroxisome Pro1iferationt
Chatteriee, B., Song, C. S., Kim, J. M. & Roy, A. K., Dec 1 1988, In: Biochemistry. 27, 25, p. 9000-9006 7 p.Research output: Contribution to journal › Article › peer-review
35 Scopus citations