Greehey Children's Cancer Research Institute

Search results

• CCDC 1422019: Experimental Crystal Structure Determination

  Shaffer, C. V. (Creator), Cai, S. (Creator), Peng, J. (Creator), Robles, A. J. (Creator), Hartley, R. M. (Creator), Powell, D. R. (Creator), Du, L. (Creator), Cichewicz, R. H. (Creator) & Mooberry, S. L. (Creator), Cambridge Crystallographic Data Centre, 2016

  DOI: 10.5517/ccdc.csd.cc1jqqlk, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc1jqqlk&sid=DataCite

  Dataset

• Age-associated genes in human mammary gland drive human breast cancer progression

  Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5022674.v1, https://springernature.figshare.com/collections/Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/5022674/1

  Dataset

• MOESM1 of Estrogen receptor coregulator binding modulator (ERX-11) enhances the activity of CDK4/6 inhibitors against estrogen receptor-positive breast cancers

  Viswanadhapalli, S. (Creator), Ma, S. (Creator), Sareddy, G. R. (Creator), Lee, T.-K. (Creator), Li, M. (Creator), Gilbreath, C. (Creator), Liu, X. (Creator), Luo, Y. (Creator), Pratap, U. P. (Creator), Zhou, M. (Creator), Blatt, E. B. (Creator), Kassees, K. (Creator), Arteaga, C. (Creator), Alluri, P. (Creator), Rao, M. (Creator), Weintraub, S. T. (Creator), Tekmal, R. R. (Creator), Ahn, J.-M. (Creator), Raj, G. V. (Creator), Vadlamudi, R. K. (Creator), Kane, A. M. (Contributor) & Verkest, V. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.11466699, https://springernature.figshare.com/articles/presentation/MOESM1_of_Estrogen_receptor_coregulator_binding_modulator_ERX-11_enhances_the_activity_of_CDK4_6_inhibitors_against_estrogen_receptor-positive_breast_cancers/11466699

  Dataset

• MOESM1 of Estrogen receptor coregulator binding modulator (ERX-11) enhances the activity of CDK4/6 inhibitors against estrogen receptor-positive breast cancers

  Viswanadhapalli, S. (Creator), Ma, S. (Creator), Sareddy, G. R. (Creator), Lee, T.-K. (Creator), Li, M. (Creator), Gilbreath, C. (Creator), Liu, X. (Creator), Luo, Y. (Creator), Pratap, U. P. (Creator), Zhou, M. (Creator), Blatt, E. B. (Creator), Kassees, K. (Creator), Arteaga, C. (Creator), Alluri, P. (Creator), Rao, M. (Creator), Weintraub, S. T. (Creator), Tekmal, R. R. (Creator), Ahn, J.-M. (Creator), Raj, G. V. (Creator), Vadlamudi, R. K. (Creator), Harris, J. W. (Contributor) & Zhou, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.11466699.v1, https://springernature.figshare.com/articles/presentation/MOESM1_of_Estrogen_receptor_coregulator_binding_modulator_ERX-11_enhances_the_activity_of_CDK4_6_inhibitors_against_estrogen_receptor-positive_breast_cancers/11466699/1

  Dataset

• Androgen-Responsive microRNAs in mouse Sertoli Cells

  Panneerdoss, S. (Contributor), Shetty, G. (Contributor), Wang, H. (Contributor) & Chen, Y. (Contributor), ArrayExpress, 2012

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-37679

  Dataset

• Additional file 14 of Age-associated genes in human mammary gland drive human breast cancer progression

  Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12487352, https://springernature.figshare.com/articles/Additional_file_14_of_Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/12487352

  Dataset

• Structure of SARS-CoV-2 nsp16/nsp10 complex in presence of Cap-1 analog (m7GpppAmU) and SAH

  Viswanathan, T. (Contributor), Misra, A. (Contributor), Chan, S.-H. (Contributor), Qi, S. (Contributor), Dai, N. (Contributor), Arya, S. (Contributor), Martinez-Sobrido, L. (Contributor) & Gupta, Y. K. (Contributor), Protein Data Bank (PDB), May 5 2021

  DOI: 10.2210/pdb7LW3/pdb, https://www.wwpdb.org/pdb?id=pdb_00007lw3

  Dataset

• A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data

  Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3645446, https://figshare.com/collections/A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/3645446

  Dataset

• Transcriptional profiling of lung cancer cells over-expression miR-34a

  Chakravarti, D. (Contributor) & Pertsemlidis, A. (Contributor), ArrayExpress, 2012

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-38341

  Dataset

• Additional file 12 of Age-associated genes in human mammary gland drive human breast cancer progression

  Gu, X. (Creator), Wang, B. (Contributor), Zhu, H. (Contributor), Zhou, Y. (Creator), Horning, A. M. (Creator), Huang, T.H.-M. (Creator), Chen, Y. (Contributor), Houghton, P. (Creator), Lai, Z. (Creator), Michalek, J. E. (Creator) & Sun, L.-Z. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12487334, https://springernature.figshare.com/articles/Additional_file_12_of_Age-associated_genes_in_human_mammary_gland_drive_human_breast_cancer_progression/12487334

  Dataset

• Astrocyte elevated gene-1 (AEG-1) and c-Myc cooperate to promote hepatocarcinogenesis

  Srivastava, J. (Contributor), Siddiq, A. (Contributor), Gredler, R. (Contributor), Rajasekaran, D. (Contributor), Garcia, D. (Contributor), Lai, Z. (Contributor), Chen, Y. (Contributor), Balaji, U. (Contributor) & Sarkar, D. (Contributor), ArrayExpress, 2014

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-61875

  Dataset

• Additional file 4: Figure S3. of MicroRNA-195 acts as an anti-proliferative miRNA in human melanoma cells by targeting Prohibitin 1

  Cirilo, P. D. R. (Creator), de Sousa Andrade, L. N. (Contributor), Corrêa, B. R. S. (Creator), Qiao, M. (Creator), Furuya, T. K. (Contributor), Chammas, R. (Creator) & Penalva, L. O. F. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3927946_d4, https://springernature.figshare.com/articles/figure/Additional_file_4_Figure_S3_of_MicroRNA-195_acts_as_an_anti-proliferative_miRNA_in_human_melanoma_cells_by_targeting_Prohibitin_1/5593117

  Dataset

• Additional file 6: Figure S5. of MicroRNA-195 acts as an anti-proliferative miRNA in human melanoma cells by targeting Prohibitin 1

  Cirilo, P. D. R. (Creator), de Sousa Andrade, L. N. (Contributor), Corrêa, B. R. S. (Creator), Qiao, M. (Creator), Furuya, T. K. (Contributor), Chammas, R. (Creator) & Penalva, L. O. F. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3927946_d6, https://springernature.figshare.com/articles/figure/Additional_file_6_Figure_S5_of_MicroRNA-195_acts_as_an_anti-proliferative_miRNA_in_human_melanoma_cells_by_targeting_Prohibitin_1/5593156

  Dataset

• Additional file 8: Figure S7. of MicroRNA-195 acts as an anti-proliferative miRNA in human melanoma cells by targeting Prohibitin 1

  Cirilo, P. D. R. (Creator), de Sousa Andrade, L. N. (Contributor), Corrêa, B. R. S. (Creator), Qiao, M. (Creator), Furuya, T. K. (Contributor), Chammas, R. (Creator) & Penalva, L. O. F. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3927946_d8, https://springernature.figshare.com/articles/figure/Additional_file_8_Figure_S7_of_MicroRNA-195_acts_as_an_anti-proliferative_miRNA_in_human_melanoma_cells_by_targeting_Prohibitin_1/5593174

  Dataset

• MOESM2 of An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data

  Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.11479425.v1, https://springernature.figshare.com/articles/MOESM2_of_An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/11479425/1

  Dataset

• Luteolin inhibits Musashi1 binding to RNA and disrupts cancer phenotypes in glioblastoma cells

  Yi, C. (Creator), Li, G. (Creator), Ivanov, D. N. (Creator), Wang, Z. (Creator), Velasco, M. X. (Creator), Hernández, G. (Contributor), Kaundal, S. (Creator), Villarreal, J. (Creator), Gupta, Y. K. (Creator), Qiao, M. (Creator), Hubert, C. G. (Creator), Hart, M. J. (Creator) & Penalva, L. O. F. (Contributor), Taylor & Francis, 2019

  DOI: 10.6084/m9.figshare.7357895, https://tandf.figshare.com/articles/dataset/Luteolin_inhibits_Musashi1_binding_to_RNA_and_disrupts_cancer_phenotypes_in_glioblastoma_cells/7357895

  Dataset

• XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation

  Liu, Y. (Creator), Wu, P. (Creator), Zhou, J. (Creator), Johnson-Pais, T. L. (Creator), Lai, Z. (Creator), Chowdhury, W. H. (Creator), Rodriguez, R. (Creator) & Chen, Y. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3895993, https://springernature.figshare.com/collections/XBSeq2_a_fast_and_accurate_quantification_of_differential_expression_and_differential_polyadenylation/3895993

  Dataset

• Luteolin inhibits Musashi1 binding to RNA and disrupts cancer phenotypes in glioblastoma cells

  Yi, C. (Creator), Li, G. (Creator), Ivanov, D. N. (Creator), Wang, Z. (Creator), Velasco, M. X. (Creator), Hernández, G. (Contributor), Kaundal, S. (Creator), Villarreal, J. (Creator), Gupta, Y. K. (Creator), Qiao, M. (Creator), Hubert, C. G. (Creator), Hart, M. J. (Creator) & Penalva, L. O. F. (Contributor), Taylor & Francis, 2019

  DOI: 10.6084/m9.figshare.7357895.v2, https://tandf.figshare.com/articles/dataset/Luteolin_inhibits_Musashi1_binding_to_RNA_and_disrupts_cancer_phenotypes_in_glioblastoma_cells/7357895/2

  Dataset

• Crystal structure of the SARS CoV-2 Papain-like protease in complex with peptide inhibitor VIR251

  Rut, W. (Contributor), Lv, Z. (Contributor), Zmudzinski, M. (Contributor), Patchett, S. (Contributor), Nayak, D. (Contributor), Snipas, S. J. (Contributor), Oualid, F. E. (Contributor), Huang, T. T. (Contributor), Bekes, M. (Contributor), Drag, M. (Contributor) & Olsen, S. K. (Contributor), Protein Data Bank (PDB), May 20 2020

  DOI: 10.2210/pdb6WX4/pdb, https://www.wwpdb.org/pdb?id=pdb_00006wx4

  Dataset

• CCDC 835719: Experimental Crystal Structure Determination

  Brien, K. A. (Creator), Bandi, R. K. (Creator), Behera, A. K. (Creator), Mishra, B. K. (Creator), Majumdar, P. (Creator), Satam, V. (Creator), Savagian, M. (Creator), Tzou, S. (Creator), Lee, M. (Creator), Zeller, M. (Creator), Robles, A. J. (Creator), Mooberry, S. (Creator) & Pati, H. (Creator), Cambridge Crystallographic Data Centre, 2012

  DOI: 10.5517/ccx1mp7, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccx1mp7&sid=DataCite

  Dataset

• Ring1B C-terminal domain/Cbx7 Cbox Complex

  Wang, R. (Contributor), Taylor, A. B. (Contributor), Leal, B. Z. (Contributor), Chadwell, L. V. (Contributor), Ilangovan, U. (Contributor), Robinson, A. K. (Contributor), Schirf, V. (Contributor), Hart, P. J. (Contributor), Lafer, E. M. (Contributor), Demeler, B. (Contributor), Hinck, A. P. (Contributor), McEwen, D. G. (Contributor) & Kim, C. A. (Contributor), Protein Data Bank (PDB), Aug 25 2010

  DOI: 10.2210/pdb3GS2/pdb, https://www.wwpdb.org/pdb?id=pdb_00003gs2

  Dataset

• The proBAM and proBed standard formats: enabling a seamless integration of genomics and proteomics data

  Menschaert, G. (Creator), Wang, X. (Creator), Jones, A. R. (Creator), Ghali, F. (Creator), Fenyö, D. (Creator), Olexiouk, V. (Creator), Zhang, B. (Creator), Deutsch, E. W. (Creator), Ternent, T. (Creator) & Vizcaíno, J. A. (Creator), Figshare, 2018

  DOI: 10.6084/m9.figshare.c.3992754, https://springernature.figshare.com/collections/The_proBAM_and_proBed_standard_formats_enabling_a_seamless_integration_of_genomics_and_proteomics_data/3992754

  Dataset

• Additional file 1: Figure S1. of A hierarchical model for clustering m6A methylation peaks in MeRIP-seq data

  Cui, X. (Contributor), Meng, J. (Creator), Zhang, S. (Contributor), Rao, M. K. (Creator), Chen, Y. (Contributor) & Huang, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3645446_d3.v1, https://springernature.figshare.com/articles/figure/Additional_file_1_Figure_S1_of_A_hierarchical_model_for_clustering_m6A_methylation_peaks_in_MeRIP-seq_data/4472081/1

  Dataset

• High-throughput analyses of hnRNP H1 dissects its multi-functional aspect

  Uren, P. J. (Creator), Bahrami-Samani, E. (Creator), de Araujo, P. R. (Contributor), Vogel, C. (Creator), Qiao, M. (Creator), Burns, S. C. (Creator), Smith, A. D. (Creator) & Penalva, L. O. F. (Contributor), Taylor & Francis, 2016

  DOI: 10.6084/m9.figshare.1632842.v1, https://figshare.com/articles/High_throughput_analyses_of_hnRNP_H1_dissects_its_multi_functional_aspect/1632842/1

  Dataset

• Daoy gene expression

  De Sousa Abreu, R. (Contributor), Ko, D. (Contributor), Burns, S. C. (Contributor) & Penalva, L. O. (Contributor), Gene Expression Omnibus, Feb 23 2010

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE20492

  Dataset