Department of Population Health Sciences

Search results

• Additional file 1: Table S1. of A simple gene set-based method accurately predicts the synergy of drug pairs

  Hsu, Y.-C. (Contributor), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor), Hsiao, T.-H. (Contributor) & Chuang, E. Y. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3606356_d2.v1, https://springernature.figshare.com/articles/dataset/Additional_file_1_Table_S1_of_A_simple_gene_set-based_method_accurately_predicts_the_synergy_of_drug_pairs/4348436/1

  Dataset

• Additional file 1: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163923, https://springernature.figshare.com/articles/Additional_file_1_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163923

  Dataset

• Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4512974, https://springernature.figshare.com/collections/Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/4512974

  Dataset

• Additional file 2: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163929, https://springernature.figshare.com/articles/Additional_file_2_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163929

  Dataset

• Additional file 2: of CeL-ID: cell line identification using RNA-seq data

  Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.7666778, https://springernature.figshare.com/articles/Additional_file_2_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666778

  Dataset

• Additional file 2 of CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

  Mostavi, M. (Creator), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor) & Huang, Y. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.14583635, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_CancerSiamese_one-shot_learning_for_predicting_primary_and_metastatic_tumor_types_unseen_during_model_training/14583635

  Dataset

• Additional file 1: of GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization

  Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Zhang, T. (Contributor), Zhang, S. (Contributor), Huang, Y. (Contributor) & Chen, Y. (Contributor), Figshare, 2018

  DOI: 10.6084/m9.figshare.7502822.v1, https://springernature.figshare.com/articles/Additional_file_1_of_GSAE_an_autoencoder_with_embedded_gene-set_nodes_for_genomics_functional_characterization/7502822/1

  Dataset

• Transcription profiling by array of hematopoietic stem cells from mice heterozygous for CREB binding protein

  Day, C. (Contributor), Zhou, T. (Contributor), Zhou, Q. (Contributor), Suresh, U. (Contributor) & Chen, Y. (Contributor), ArrayExpress, 2012

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-18061

  Dataset

• MOESM2 of An ancestry informative marker panel design for individual ancestry estimation of Hispanic population using whole exome sequencing data

  Wang, L.-J. (Creator), Zhang, C. W. (Creator), Su, S. C. (Creator), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor), Lai, Z. (Creator), Bouamar, H. (Creator), Ramirez, A. G. (Creator), Cigarroa, F. G. (Creator), Sun, L.-Z. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.11479425, https://springernature.figshare.com/articles/MOESM2_of_An_ancestry_informative_marker_panel_design_for_individual_ancestry_estimation_of_Hispanic_population_using_whole_exome_sequencing_data/11479425

  Dataset

• CancerSiamese: one-shot learning for predicting primary and metastatic tumor types unseen during model training

  Mostavi, M. (Creator), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor) & Huang, Y. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5422418.v1, https://springernature.figshare.com/collections/CancerSiamese_one-shot_learning_for_predicting_primary_and_metastatic_tumor_types_unseen_during_model_training/5422418/1

  Dataset

• MBDDiff: an R package designed specifically for processing MBDcap-seq datasets

  Liu, Y. (Contributor), Wilson, D. (Creator), Leach, R. J. (Creator) & Chen, Y. (Contributor), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3634943.v1, https://figshare.com/collections/MBDDiff_an_R_package_designed_specifically_for_processing_MBDcap-seq_datasets/3634943/1

  Dataset

• CeL-ID: cell line identification using RNA-seq data

  Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4387862.v1, https://springernature.figshare.com/collections/CeL-ID_cell_line_identification_using_RNA-seq_data/4387862/1

  Dataset

• CeL-ID: cell line identification using RNA-seq data

  Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.c.4387862, https://springernature.figshare.com/collections/CeL-ID_cell_line_identification_using_RNA-seq_data/4387862

  Dataset

• Additional file 3: of Preclinical rationale for entinostat in embryonal rhabdomyosarcoma

  Bharathy, N. (Contributor), Berlow, N. E. (Creator), Wang, E. (Creator), Abraham, J. (Contributor), Settelmeyer, T. P. (Creator), Hooper, J. E. (Creator), Svalina, M. N. (Creator), Bajwa, Z. (Creator), Goros, M. W. (Creator), Hernandez, B. S. (Creator), Wolff, J. E. (Creator), Pal, R. (Contributor), Davies, A. M. (Creator), Ashok, A. (Contributor), Bushby, D. (Creator), Mancini, M. (Creator), Noakes, C. (Creator), Goodwin, N. C. (Creator), Ordentlich, P. (Creator), Keck, J. (Creator), Hawkins, D. S. (Creator), Rudzinski, E. R. (Creator), Mansoor, A. (Contributor), Perkins, T. J. (Creator), Vakoc, C. R. (Creator), Michalek, J. E. (Creator) & Keller, C. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.8163938, https://springernature.figshare.com/articles/Additional_file_3_of_Preclinical_rationale_for_entinostat_in_embryonal_rhabdomyosarcoma/8163938

  Dataset

• XBSeq2: a fast and accurate quantification of differential expression and differential polyadenylation

  Liu, Y. (Creator), Wu, P. (Creator), Zhou, J. (Creator), Johnson-Pais, T. L. (Creator), Lai, Z. (Creator), Chowdhury, W. H. (Creator), Rodriguez, R. (Creator) & Chen, Y. (Creator), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3895993.v1, https://springernature.figshare.com/collections/XBSeq2_a_fast_and_accurate_quantification_of_differential_expression_and_differential_polyadenylation/3895993/1

  Dataset

• Additional file 1: of CeL-ID: cell line identification using RNA-seq data

  Mohammad, T. A. (Contributor), Tsai, Y. S. (Creator), Ameer, S. (Contributor), Chen, H.-I. H. (Contributor), Chiu, Y.-C. (Contributor) & Chen, Y. (Contributor), Figshare, 2019

  DOI: 10.6084/m9.figshare.7666775.v1, https://springernature.figshare.com/articles/Additional_file_1_of_CeL-ID_cell_line_identification_using_RNA-seq_data/7666775/1

  Dataset

• The Estrogen Receptor Co-Regulator Protein, Proline Glutamic Acid and Leucine Rich Protein 1 (PELP1) Mediates Estrogen Rapid Signaling and Neuroprotection in the Brain

  Zhang, Q. (Contributor), Wang, R. (Contributor), Scott, E. (Contributor), Zou, Y. (Contributor), Chen, Y. (Contributor), Dong, Y. (Contributor) & Brann, D. (Contributor), ArrayExpress, 2015

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-72136

  Dataset

• Covid-19 and Cancer Consortium (CCC19) breast cancer and racial disparities outcomes study

  Nagaraj, G. (Contributor), Khaki, A. (Contributor) & Shah, D. (Contributor), ZENODO, Feb 20 2023

  DOI: 10.5281/zenodo.7293199, https://zenodo.org/record/7293199

  Dataset

• Additional file 2: Table S2. of A simple gene set-based method accurately predicts the synergy of drug pairs

  Hsu, Y.-C. (Contributor), Chiu, Y.-C. (Contributor), Chen, Y. (Contributor), Hsiao, T.-H. (Contributor) & Chuang, E. Y. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3606356_d1, https://springernature.figshare.com/articles/dataset/Additional_file_2_Table_S2_of_A_simple_gene_set-based_method_accurately_predicts_the_synergy_of_drug_pairs/4348421

  Dataset

• Covid-19 and Cancer Consortium (CCC19) breast cancer and racial disparities outcomes study

  Nagaraj, G. (Contributor), Khaki, A. (Contributor) & Shah, D. (Contributor), ZENODO, Feb 20 2023

  DOI: 10.5281/zenodo.7644334, https://zenodo.org/records/7644334

  Dataset

• microRNA-449a functions as a tumor suppressor in neuroblastoma through inducing cell differentiation and cell cycle arrest

  Zhao, Z. (Contributor), Ma, X. (Contributor), Sung, D. (Creator), Li, M. (Creator), Kosti, A. (Creator), Lin, G. (Creator), Chen, Y. (Contributor), Pertsemlidis, A. (Creator), Hsiao, T.-H. (Contributor) & Du, L. (Contributor), Taylor & Francis, 2015

  DOI: 10.6084/m9.figshare.1332512, https://tandf.figshare.com/articles/dataset/microRNA_449a_functions_as_a_tumor_suppressor_in_neuroblastoma_through_inducing_cell_differentiation_and_cell_cycle_arrest/1332512

  Dataset

• Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival

  Chiu, Y.-C. (Contributor), Wang, L.-J. (Creator), Lu, T.-P. (Contributor), Hsiao, T.-H. (Contributor), Chuang, E. Y. (Creator) & Chen, Y. (Contributor), Figshare, 2017

  DOI: 10.6084/m9.figshare.c.3704557.v1, https://figshare.com/collections/Differential_correlation_analysis_of_glioblastoma_reveals_immune_ceRNA_interactions_predictive_of_patient_survival/3704557/1

  Dataset

• Covid-19 and Cancer Consortium (CCC19) breast cancer and racial disparities outcomes study

  Nagaraj, G. (Creator), Khaki, A. (Creator) & Shah, D. (Creator), Dryad, Feb 20 2023

  DOI: 10.5061/dryad.1g1jwsv10, https://datadryad.org/dataset/doi:10.5061/dryad.1g1jwsv10

  Dataset

• microRNA-449a functions as a tumor suppressor in neuroblastoma through inducing cell differentiation and cell cycle arrest

  Zhao, Z. (Contributor), Ma, X. (Contributor), Sung, D. (Creator), Li, M. (Creator), Kosti, A. (Creator), Lin, G. (Creator), Chen, Y. (Contributor), Pertsemlidis, A. (Creator), Hsiao, T.-H. (Contributor) & Du, L. (Contributor), Taylor & Francis, 2015

  DOI: 10.6084/m9.figshare.1332512.v4, https://tandf.figshare.com/articles/dataset/microRNA_449a_functions_as_a_tumor_suppressor_in_neuroblastoma_through_inducing_cell_differentiation_and_cell_cycle_arrest/1332512/4

  Dataset

• Aortic stiffness and cerebral microbleeds: The Framingham Heart Study

  Romero, J. R. (Creator), Himali, J. J. (Contributor), Beiser, A. (Creator), Pase, M. P. (Creator), Davis-Plourde, K. L. (Creator), Parva, P. (Contributor), Seshadri, S. (Creator) & Mitchell, G. F. (Creator), SAGE Journals, 2021

  DOI: 10.25384/sage.c.5257046.v1, https://sage.figshare.com/collections/Aortic_stiffness_and_cerebral_microbleeds_The_Framingham_Heart_Study/5257046/1

  Dataset