Department of Molecular Medicine

Search results

• Epigenomics-based identification of oestrogen-regulated long noncoding RNAs in ER+ breast cancer

  Zhang, Z. (Creator), Yu, W. (Creator), Tang, D. (Creator), Zhou, Y. (Creator), Bi, M. (Creator), Wang, H. (Creator), Zheng, Y. (Creator), Chen, M. (Creator), Li, L. (Creator), Xu, X. (Creator), Zhang, W. (Creator), Tao, H. (Creator), Jin, V. X. (Creator), Liu, Z. (Creator) & Chen, L. (Creator), Taylor & Francis, 2020

  DOI: 10.6084/m9.figshare.12851855.v3, https://tandf.figshare.com/articles/dataset/Epigenomics-based_identification_of_oestrogen-regulated_long_noncoding_RNAs_in_ER_breast_cancer/12851855/3

  Dataset

• Epigenomics-based identification of oestrogen-regulated long noncoding RNAs in ER+ breast cancer

  Zhang, Z. (Creator), Yu, W. (Creator), Tang, D. (Creator), Zhou, Y. (Contributor), Bi, M. (Contributor), Wang, H. (Creator), Zheng, Y. (Creator), Chen, M. (Contributor), Li, L. (Creator), Xu, X. (Contributor), Zhang, W. (Creator), Tao, H. (Contributor), Jin, V. X. (Creator), Liu, Z. (Contributor) & Chen, L. (Contributor), Taylor & Francis, 2020

  DOI: 10.6084/m9.figshare.12851855.v1, https://tandf.figshare.com/articles/dataset/Epigenomics-based_identification_of_oestrogen-regulated_long_noncoding_RNAs_in_ER_breast_cancer/12851855/1

  Dataset

• Enhancer Activation Requires Trans-Recruitment of a Mega Transcription Factor Complex (ChIP-seq)

  Liu, Z. (Contributor), Rosenfeld, M. G. (Contributor) & Merkurjev, D. (Contributor), Gene Expression Omnibus, Aug 8 2014

  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE60270

  Dataset

• Comparison of rectal swab, glove tip, and participant-collected stool techniques for gut microbiome sampling

  Short, M. I. (Creator), Hudson, R. (Creator), Besasie, B. D. (Creator), Reveles, K. R. (Creator), Shah, D. P. (Contributor), Nicholson, S. (Creator), Johnson-Pais, T. L. (Creator), Weldon, K. (Contributor), Lai, Z. (Creator), Leach, R. J. (Creator), Fongang, B. (Creator) & Liss, M. A. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5269927, https://springernature.figshare.com/collections/Comparison_of_rectal_swab_glove_tip_and_participant-collected_stool_techniques_for_gut_microbiome_sampling/5269927

  Dataset

• Additional file 3 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

  Zhou, Y. (Creator), Cheng, X. (Creator), Yang, Y. (Creator), Li, T. (Creator), Li, J. (Creator), Huang, T.H.-M. (Creator), Wang, J. (Creator), Lin, S. (Creator) & Jin, V. X. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12799465.v1, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Modeling_and_analysis_of_Hi-C_data_by_HiSIF_identifies_characteristic_promoter-distal_loops/12799465/1

  Dataset

• Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

  Zhou, Y. (Creator), Cheng, X. (Creator), Yang, Y. (Creator), Li, T. (Creator), Li, J. (Creator), Huang, T.H.-M. (Creator), Wang, J. (Creator), Lin, S. (Creator) & Jin, V. X. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.c.5090452, https://springernature.figshare.com/collections/Modeling_and_analysis_of_Hi-C_data_by_HiSIF_identifies_characteristic_promoter-distal_loops/5090452

  Dataset

• Comparison of rectal swab, glove tip, and participant-collected stool techniques for gut microbiome sampling

  Short, M. I. (Creator), Hudson, R. (Creator), Besasie, B. D. (Creator), Reveles, K. R. (Creator), Shah, D. P. (Contributor), Nicholson, S. (Creator), Johnson-Pais, T. L. (Creator), Weldon, K. (Contributor), Lai, Z. (Creator), Leach, R. J. (Creator), Fongang, B. (Creator) & Liss, M. A. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.c.5269927.v1, https://springernature.figshare.com/collections/Comparison_of_rectal_swab_glove_tip_and_participant-collected_stool_techniques_for_gut_microbiome_sampling/5269927/1

  Dataset

• Additional file 3 of Hi-C profiling of cancer spheroids identifies 3D-growth-specific chromatin interactions in breast cancer endocrine resistance

  Li, J. (Creator), Fang, K. (Creator), Choppavarapu, L. (Creator), Yang, K. (Creator), Yang, Y. (Creator), Wang, J. (Creator), Cao, R. (Creator), Jatoi, I. (Creator) & Jin, V. X. (Creator), Figshare, 2021

  DOI: 10.6084/m9.figshare.16639797, https://springernature.figshare.com/articles/dataset/Additional_file_3_of_Hi-C_profiling_of_cancer_spheroids_identifies_3D-growth-specific_chromatin_interactions_in_breast_cancer_endocrine_resistance/16639797

  Dataset

• Additional file 7 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

  Zhou, Y. (Creator), Cheng, X. (Creator), Yang, Y. (Creator), Li, T. (Creator), Li, J. (Creator), Huang, T.H.-M. (Creator), Wang, J. (Creator), Lin, S. (Creator) & Jin, V. X. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12799477.v1, https://springernature.figshare.com/articles/dataset/Additional_file_7_of_Modeling_and_analysis_of_Hi-C_data_by_HiSIF_identifies_characteristic_promoter-distal_loops/12799477/1

  Dataset

• Additional file 6 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

  Zhou, Y. (Creator), Cheng, X. (Creator), Yang, Y. (Creator), Li, T. (Creator), Li, J. (Creator), Huang, T.H.-M. (Creator), Wang, J. (Creator), Lin, S. (Creator) & Jin, V. X. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12799474, https://springernature.figshare.com/articles/dataset/Additional_file_6_of_Modeling_and_analysis_of_Hi-C_data_by_HiSIF_identifies_characteristic_promoter-distal_loops/12799474

  Dataset

• Covid-19 and Cancer Consortium (CCC19) breast cancer and racial disparities outcomes study

  Nagaraj, G. (Contributor), Khaki, A. (Contributor) & Shah, D. (Contributor), ZENODO, Feb 20 2023

  DOI: 10.5061/dryad.1g1jwsv10, https://zenodo.org/record/7657781

  Dataset

• Additional file 1: Figure S1. of Mediator subunit Med12 contributes to the maintenance of neural stem cell identity

  Kim, N. H. (Creator), Livi, C. B. (Creator), Yew, P. R. (Contributor) & Boyer, T. G. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3618305_d3, https://springernature.figshare.com/articles/figure/Additional_file_1_Figure_S1_of_Mediator_subunit_Med12_contributes_to_the_maintenance_of_neural_stem_cell_identity/4385318

  Dataset

• Mediator subunit Med12 contributes to the maintenance of neural stem cell identity

  Kim, N. H. (Creator), Livi, C. B. (Creator), Yew, P. R. (Contributor) & Boyer, T. G. (Creator), Figshare, 2016

  DOI: 10.6084/m9.figshare.c.3618305.v1, https://figshare.com/collections/Mediator_subunit_Med12_contributes_to_the_maintenance_of_neural_stem_cell_identity/3618305/1

  Dataset

• Structure of the ATPrS-Mre11/Rad50-DNA complex

  Liu, Y. (Contributor), Sung, S. (Contributor), Kim, Y. (Contributor), Li, F. (Contributor), Gwon, G. (Contributor), Jo, A. (Contributor), Kim, A.-K. (Contributor), Kim, T. (Contributor), Song, O.-K. (Contributor), Lee, S. E. (Contributor) & Cho, Y. (Contributor), Protein Data Bank (PDB), Mar 2 2016

  DOI: 10.2210/pdb5F3W/pdb, https://www.wwpdb.org/pdb?id=pdb_00005f3w

  Dataset

• Sexual dimorphism in activation of placental autophagy in obese women with evidence for fetal programming from a placenta-specific mouse model

  Muralimanoharan, S. (Contributor), Gao, X. (Contributor), Weintraub, S. (Creator), Myatt, L. (Creator) & Maloyan, A. (Creator), Taylor & Francis, 2016

  DOI: 10.6084/m9.figshare.3118504, https://tandf.figshare.com/articles/dataset/Sexual_Dimorphism_in_Activation_of_Placental_Autophagy_in_Obese_Women_with_Evidence_for_Fetal_Programming_from_a_Placenta_Specific_Mouse_Model/3118504

  Dataset

• CCDC 1422019: Experimental Crystal Structure Determination

  Shaffer, C. V. (Creator), Cai, S. (Creator), Peng, J. (Creator), Robles, A. J. (Creator), Hartley, R. M. (Creator), Powell, D. R. (Creator), Du, L. (Creator), Cichewicz, R. H. (Creator) & Mooberry, S. L. (Creator), Cambridge Crystallographic Data Centre, 2016

  DOI: 10.5517/ccdc.csd.cc1jqqlk, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccdc.csd.cc1jqqlk&sid=DataCite

  Dataset

• Additional file 3: of BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells

  Zhang, X. (Creator), Wang, Y. (Creator), Chiang, H.-C. (Creator), Hsieh, Y.-P. (Creator), Lu, C. (Creator), Park, B. H. (Creator), Jatoi, I. (Creator), Jin, V. X. (Creator), Hu, Y. (Creator) & Li, R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.10034471, https://springernature.figshare.com/articles/presentation/Additional_file_3_of_BRCA1_mutations_attenuate_super-enhancer_function_and_chromatin_looping_in_haploinsufficient_human_breast_epithelial_cells/10034471

  Dataset

• CCDC 835721: Experimental Crystal Structure Determination

  Brien, K. A. (Creator), Bandi, R. K. (Creator), Behera, A. K. (Creator), Mishra, B. K. (Creator), Majumdar, P. (Creator), Satam, V. (Creator), Savagian, M. (Creator), Tzou, S. (Creator), Lee, M. (Creator), Zeller, M. (Creator), Robles, A. J. (Creator), Mooberry, S. (Creator) & Pati, H. (Creator), Cambridge Crystallographic Data Centre, 2012

  DOI: 10.5517/ccx1mr9, http://www.ccdc.cam.ac.uk/services/structure_request?id=doi:10.5517/ccx1mr9&sid=DataCite

  Dataset

• Crystal structure of MjMre11-DNA1 complex

  Sung, S. (Contributor), Li, F. (Contributor), Park, Y. B. (Contributor), Kim, J. S. (Contributor), Kim, A.-K. (Contributor), Song, O.-K. (Contributor), Kim, J. (Contributor), Che, J. (Contributor), Lee, S. E. (Contributor) & Cho, Y. (Contributor), Protein Data Bank (PDB), Oct 15 2014

  DOI: 10.2210/pdb4TUI/pdb, https://www.wwpdb.org/pdb?id=pdb_00004tui

  Dataset

• Additional file 1 of ERα-related chromothripsis enhances concordant gene transcription on chromosome 17q11.1-q24.1 in luminal breast cancer

  Lin, C.-L. (Creator), Tan, X. (Creator), Chen, M. (Creator), Kusi, M. (Creator), Hung, C.-N. (Creator), Chou, C.-W. (Creator), Hsu, Y.-T. (Creator), Wang, C.-M. (Creator), Kirma, N. (Creator), Chen, C.-L. (Creator), Lin, C.-H. (Creator), Lathrop, K. I. (Creator), Elledge, R. (Creator), Kaklamani, V. G. (Creator), Mitsuya, K. (Creator) & Huang, T.H.-M. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12308198, https://springernature.figshare.com/articles/presentation/Additional_file_1_of_ER_-related_chromothripsis_enhances_concordant_gene_transcription_on_chromosome_17q11_1-q24_1_in_luminal_breast_cancer/12308198

  Dataset

• PARP1-MGMT complex underpins pathway crosstalk in O6-methylguanine repair

  Cropper, J. D. (Creator), Alimbetov, D. S. (Creator), Brown, K. T. G. (Creator), Likhotvorik, R. I. (Creator), Robles, A. J. (Creator), Guerra, J. T. (Creator), He, B. (Creator), Chen, Y. (Creator), Kwon, Y. (Creator) & Kurmasheva, R. T. (Creator), Figshare, 2022

  DOI: 10.6084/m9.figshare.c.6249616.v1, https://springernature.figshare.com/collections/PARP1-MGMT_complex_underpins_pathway_crosstalk_in_O6-methylguanine_repair/6249616/1

  Dataset

• Additional file 1: of BRCA1 mutations attenuate super-enhancer function and chromatin looping in haploinsufficient human breast epithelial cells

  Zhang, X. (Creator), Wang, Y. (Creator), Chiang, H.-C. (Creator), Hsieh, Y.-P. (Creator), Lu, C. (Creator), Park, B. H. (Creator), Jatoi, I. (Creator), Jin, V. X. (Creator), Hu, Y. (Creator) & Li, R. (Creator), Figshare, 2019

  DOI: 10.6084/m9.figshare.10034462, https://springernature.figshare.com/articles/dataset/Additional_file_1_of_BRCA1_mutations_attenuate_super-enhancer_function_and_chromatin_looping_in_haploinsufficient_human_breast_epithelial_cells/10034462

  Dataset

• Additional file 2 of ERα-related chromothripsis enhances concordant gene transcription on chromosome 17q11.1-q24.1 in luminal breast cancer

  Lin, C.-L. (Creator), Tan, X. (Creator), Chen, M. (Creator), Kusi, M. (Creator), Hung, C.-N. (Creator), Chou, C.-W. (Creator), Hsu, Y.-T. (Creator), Wang, C.-M. (Creator), Kirma, N. (Creator), Chen, C.-L. (Creator), Lin, C.-H. (Creator), Lathrop, K. I. (Creator), Elledge, R. (Creator), Kaklamani, V. G. (Creator), Mitsuya, K. (Creator) & Huang, T.H.-M. (Creator), Figshare, 2020

  DOI: 10.6084/m9.figshare.12308207, https://springernature.figshare.com/articles/dataset/Additional_file_2_of_ER_-related_chromothripsis_enhances_concordant_gene_transcription_on_chromosome_17q11_1-q24_1_in_luminal_breast_cancer/12308207

  Dataset

• Crystal structure of MjMre11-DNA2 complex

  Sung, S. (Contributor), Li, F. (Contributor), Park, Y. B. (Contributor), Kim, J. S. (Contributor), Kim, A.-K. (Contributor), Song, O.-K. (Contributor), Kim, J. (Contributor), Che, J. (Contributor), Lee, S. E. (Contributor) & Cho, Y. (Contributor), Protein Data Bank (PDB), Oct 15 2014

  DOI: 10.2210/pdb4TUG/pdb, https://www.wwpdb.org/pdb?id=pdb_00004tug

  Dataset

• Astrocyte elevated gene-1 (AEG-1) and c-Myc cooperate to promote hepatocarcinogenesis

  Srivastava, J. (Contributor), Siddiq, A. (Contributor), Gredler, R. (Contributor), Rajasekaran, D. (Contributor), Garcia, D. (Contributor), Lai, Z. (Contributor), Chen, Y. (Contributor), Balaji, U. (Contributor) & Sarkar, D. (Contributor), ArrayExpress, 2014

  https://www.ebi.ac.uk/arrayexpress/experiments/E-GEOD-61875

  Dataset